Nakaoka and Palu introduced the notion of extriangulated categories by extracting the similarities between exact categories and triangulated categories. In this paper, we study cotorsion pairs in a Frobenius extriangulated category $\C$. Especially, for a $2$-Calabi-Yau extriangulated category $\C$ with a cluster structure, we describe the cluster substructure in the cotorsion pairs. For rooted cluster algebras arising from $\C$ with cluster tilting objects, we give a one-to-one correspondence between cotorsion pairs in $\C$ and certain pairs of their rooted cluster subalgebras which we call complete pairs. Finally, we explain this correspondence by an example relating to a Grassmannian cluster algebra.

In this paper, we introduce a motivic version of To¨en’s derived Hall algebra. Then we point out that the two kinds of Hall algebras in the sense of To¨en and Kontsevich–Soibelman, respectively, are Drinfeld dual pairs, not only in the classical case (by counting over finite fields) but also in the motivic version. Consequently they are canonically isomorphic. All proofs, including that for the most important associative property, are deduced in a self-contained way by analyzing the symmetry properties around the octahedral axiom, a method we used previously

We construct a new subfactor planar algebra, and as a corollary a new subfactor, with the ‘extended Haagerup’ principal graph pair. This completes the classification of irreducible amenable subfactors with index in the range ( $$ {4},{3} + \sqrt {{3}} $$ ), which was initiated by Haagerup in 1993. We prove that the subfactor planar algebra with these principal graphs is unique. We give a skein-theoretic description, and a description as a subalgebra generated by a certain element in the graph planar algebra of its principal graph. In the skein-theoretic description there is an explicit algorithm for evaluating closed diagrams. This evaluation algorithm is unusual because intermediate steps may increase the number of generators in a diagram. This is the published version ofarXiv:0909.4099 [math.OA].

We show that the standard graded cover of the well-known category $\mathcal{O}$ of Bernstein–Gelfand–Gelfand can be characterized by its compatibility with the action of the center of the enveloping algebra.

We propose the notion of partial resolution of a ring, which is by definition the endomorphism ring of a certain generator of the given ring. We prove that the singularity category of the partial resolution is a quotient of the singularity category of the given ring. Consequences and examples are given.

Consider a complete abelian category which has an injective cogenerator. If its derived category is left-complete we show that the dual of this derived category satisfies Brown representability. In particular, this is true for the derived category of an abelian AB $4^{*}$ - $n$ category and for the derived category of quasi-coherent sheaves over a nice enough scheme, including the projective finitely dimensional space.

Some uniform theorems on the artinianness of certain local cohomology modules are proven in a general situation. They generalize and imply previous results about the artinianness of some special local cohomology modules in the graded case.

In this paper, we introduce multiscale persistent functions for biomolecular structure characterization. The essential idea is to combine our multiscale rigidity functions with persistent homology analysis, so as to construct a series of multiscale persistent functions, particularly multiscale persistent entropies, for structure characterization. To clarify the fundamental idea of our method, the multiscale persistent entropy model is discussed in great detail. Mathematically, unlike the previous persistent entropy or topological entropy, a special resolution parameter is incorporated into our model. Various scales can be achieved by tuning its value. Physically, our multiscale persistent entropy can be used in conformation entropy evaluation. More specifically, it is found that our method incorporates in it a natural classification scheme. This is achieved through a density filtration of a multiscale rigidity function built from bond and/or dihedral angle distributions. To further validate our model, a systematical comparison with the traditional entropy evaluation model is done. It is found that our model is able to preserve the intrinsic topological features of biomolecular data much better than traditional approaches, particularly for resolutions in the mediate range. Moreover, our method can be successfully used in protein classification. For a test database with around nine hundred proteins, a clear separation between all-alpha and all-beta proteins can be achieved, using only the dihedral and pseudo-bond angle information. Finally, a special protein structure index (PSI) is proposed, for the first time, to describe the "regularity" of protein structures. Essentially, PSI can be used to describe the "regularity" information in any systems.

We prove that any “finite-type” component of a stability space of a triangulated category is contractible. The motivating example of such a component is the stability space of the Calabi–Yau–N category D(Gamma_N Q) associated to an ADE Dynkin quiver. In addition to showing that this is contractible we prove that the braid group Br(Q) acts freely upon it by spherical twists, in particular that the spherical twist group Br(Gamma_N Q) is isomorphic to Br(Q). This generalises the result of Brav–Thomas for the N=2 case. Other classes of triangulated categories with finite-type components in their stability spaces include locally finite triangulated categories with finite-rank Grothendieck group and discrete derived categories of finite global dimension.

Universal extensions arise naturally in the Auslander bijections. For an abelian category having Auslander-Reiten duality, we exploit a bijection triangle, which involves the Auslander bijections, universal extensions and the Auslander-Reiten duality. Some consequences are given, in particular, a conjecture by Ringel is verified.