Data Analysis, Bio-Statistics, Bio-Mathematics

[1] Wave-Shape Function Analysis: When Cepstrum Meets Time–Frequency Analysis

Chen-Yun Lin University of Toronto Li Su Academia Sinica Hau-Tieng Wu University of Toronto

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1704.42001

Distinguished Paper Award in 2018

Journal of Fourier Analysis and Applications , 2017.2
[ Download ] [ 2017-04-24 23:39:53 uploaded by cylin ] [ 991 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[2] Mathematical modeling of vertebrate limb development

Yong-Tao Zhang University of Notre Dame Mark S. Alber University of Notre Dame Stuart A. Newman New York Medical College

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1703.42004

Mathematical Biosciences, 243, 1-17, 2013
[ Download ] [ 2017-03-13 22:08:27 uploaded by ytzhangND ] [ 906 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[3] Virus Database and Online Inquiry System Based on Natural Vectors

Rui Dong Tsinghua University Hui Zheng The University of Illinois at Chicago Kun Tian Tsinghua University Shek-Chung Yau The Hong Kong University of Science and Technology Weiguang Mao Tsinghua University Wenping Yu Nankai University Changchuan Yin The University of Illinois at Chicago Chenglong Yu South Australian Health and Medical Research Institute Rong Lucy He Chicago State University Jie Yang The University of Illinois at Chicago Stephen S.-T Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1903.42004

Evolutionary Bioinformatics, 13, 1-7, 2017.10
[ Download ] [ 2019-03-18 10:27:40 uploaded by RuiDong ] [ 770 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[4] Graph connection laplacian methods can be made robust to noise

Noureddine El Karoui UC Berkeley Hau-tieng Wu University of Toronto

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1704.42002

Distinguished Paper Award in 2018

2016
[ Download ] [ 2017-04-29 11:10:13 uploaded by hauwu ] [ 728 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[5] Convex hull analysis of evolutionary and phylogenetic relationships between biological groups

Kun Tian Tsinghua University Xin Zhao Tsinghua University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42005

[ Download ] [ 2019-04-27 22:39:44 uploaded by zhaox15 ] [ 726 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[6] A new method to cluster genomes based on cumulative Fourier power spectrum

Rui Dong Tsinghua University Ziyue Zhu Tsinghua University Changchuan Yin University of Illinois at Chicago Rong L. He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1903.42005

Gene, 673, 2018.6
[ Download ] [ 2019-03-18 10:32:15 uploaded by RuiDong ] [ 683 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[7] Zika and Flaviviruses Phylogeny Based on the Alignment-Free Natural Vector Method

Yongkun Li Department of Mathematical Sciences, Tsinghua University Lily He Department of Mathematical Sciences, Tsinghua University Rong Lucy He Department of Biological Sciences, Chicago State University Stephen S.-T. Yau(Corresponding Department of Mathematical Sciences, Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1903.42003

Dna & Cell Biology, 36, (2), 1-8, 2017
[ Download ] [ 2019-03-15 15:03:30 uploaded by hell16 ] [ 620 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[8] A new method for studying the evolutionary origin of the SAR11 clade marine bacteria

Xin Zhao Tsinghua University Xiaogeng Wan Tsinghua University Rong L.He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1611.13004

Molecular Phylogenetics and Evolution, 98, 271-279, 2016.5
[ Download ] [ 2016-11-25 19:58:36 uploaded by zhaox15 ] [ 612 downloads ] [ 0 comments ] [ Cited by 1 ] [ Abstract ] [ Full ]
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[9] DFA7, a New Method to Distinguish between Intron-Containing and Intronless Genes

Chenglong Yu South Australian Health and Medical Research Institute Mo Deng Lu Zheng Rong Lucy He Jie Yang Stephen S.-T. Yau

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1703.42003

PLoS ONE, 2014
[ Download ] [ 2017-03-13 20:56:51 uploaded by yclong8848 ] [ 606 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[10] A novel strategy for clustering major depression individuals using whole-genome sequencing variant data

Chenglong Yu South Australian Health and Medical Research Institute Bernhard T. Baune University of Adelaide Julio Licinio South Australian Health and Medical Research Institute Ma-Li Wong South Australian Health and Medical Research Institute

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1703.42005

Scientific Reports, 7, (44389), 2017
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[11] Randomly distributed embedding making short-term high-dimensional data predictable

Huanfei Man Soochow University Siyang Leng Fudan University Kazuyuki Aihara Tokyo University Wei Lin Fudan University Luonan Chen Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42006

Best Paper Award in 2019

Proceedings of the National Academy of Sciences of the United States of America, 115, (43), E9994-E10002, 2018.10
[ Download ] [ 2019-04-28 19:34:56 uploaded by wlinfudan ] [ 603 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[12] Protein space: A natural method for realizing the nature of protein universe

Chenglong Yu South Australian Health and Medical Research Institute Mo Deng Shiu-Yuen Cheng Shek-Chung Yau Rong L. He Stephen S.-T. Yau

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1703.42001

Journal of Theoretical Biology, 318, 197-204, 2013
[ Download ] [ 2017-03-13 20:50:42 uploaded by yclong8848 ] [ 584 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[13] A novel alignment-free vector method to cluster protein sequences

Lily He Department of Mathematical Sciences, Tsinghua University Yongkun Li Department of Mathematical Sciences, Tsinghua University Rong Lucy He Department of Biological Sciences, Chicago State University Stephen S.-T. Yau(Corresponding author) Department of Mathematical Sciences, Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1903.42001

Journal of Theoretical Biology, 427, 41-52, 2017.6
[ Download ] [ 2019-03-15 14:50:00 uploaded by hell16 ] [ 555 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[14] Whole genome single nucleotide polymorphism genotyping of Staphylococcus aureus

Changchuan Yin University of Illinois at Chicago Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1908.42001

2019.1
[ Download ] [ 2019-08-21 02:42:56 uploaded by cyinbox ] [ 555 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[15] Real Time Classification of Viruses in 12 Dimensions

Chenglong Yu South Australian Health and Medical Research Institute Troy Hernandez Hui Zheng Shek-Chung Yau Hsin-Hsiung Huang Rong Lucy He Jie Yang Stephen S.-T. Yau

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1703.42002

PLoS ONE, 2013
[ Download ] [ 2017-03-13 20:54:32 uploaded by yclong8848 ] [ 541 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[16] A new efficient method for analyzing fungi species using correlations between nucleotides

Xin Zhao Tsinghua Universityf Kun Tian Tsinghua University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42002

[ Download ] [ 2019-04-27 21:10:40 uploaded by zhaox15 ] [ 491 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[17] A New Quantitative Approach to Tree Attributes Estimation Based on LiDAR Point Clouds

Guangpeng Fan Liangliang Nan Feixiang Chen Yanqi Dong Zhiming Wang Hao Li Danyu Chen

Geometric Analysis and Geometric Topology Geometric Modeling and Processing Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2106.15004

Remote Sensing, 12, (11), 1779, 2020.6
[ Download ] [ 2021-06-21 15:23:27 uploaded by liangliangnan ] [ 489 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[18] A novel fast vector method for genetic sequence comparison

Yongkun Li 1Department of Mathematical Sciences, Tsinghua University Lily He 1Department of Mathematical Sciences, Tsinghua University Rong Lucy He 2Department of Biological Sciences, Chicago State University Stephen S.-T. Yau(Corresponding author) 1Department of Mathematical Sciences, Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1903.42002

Scientific Reports, 1, (12226), 2017.9
[ Download ] [ 2019-03-15 14:57:39 uploaded by hell16 ] [ 486 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[19] Persistent spectral graph

Rui Wang Michigan State University Duc Duy Nguyen University of Kentucky Guowei Wei Michigan State University

Combinatorics Data Analysis, Bio-Statistics, Bio-Mathematics Algebraic Topology and General Topology mathscidoc:2103.06001

Int J Numer Meth Biomed Engng, 36, 2020.4
[ Download ] [ 2021-03-04 12:07:08 uploaded by wangru25 ] [ 471 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[20] Large-Scale Genome Comparison Based on Cumulative Fourier Power and Phase Spectra: Central Moment and Covariance Vector

Shaojun Pei Department of Mathematical Sciences, Tsinghua University, Beijing, PR China Rui Dong Department of Mathematical Sciences, Tsinghua University, Beijing, PR China Rong Lucy He Department of Biological Sciences, Chicago State University, Chicago, IL 60628, USA Stephen S.-T. Yau Department of Mathematical Sciences, Tsinghua University, Beijing, PR China

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1909.42001

Computational and Structural Biotechnology Journal, 17, 982-994, 2019.7
[ Download ] [ 2019-09-04 17:31:31 uploaded by Stephenyau ] [ 470 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[21] A novel approach to clustering genome sequences using inter-nucleotide covariance

Rui Dong Tsinghua University Lily He Tsinghua University Rong Lucy He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1909.42002

Frontiers in Genetics, 10, (234), 234, 2019.4
[ Download ] [ 2019-09-15 13:55:12 uploaded by Stephenyau ] [ 456 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[22] Convex hull principle for classification and phylogeny of eukaryotic proteins

Xin Zhao Tsinghua University Kun Tian Tsinghua University Rong L. He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42001

[ Download ] [ 2019-04-27 21:07:09 uploaded by zhaox15 ] [ 422 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[23] Comparing protein structures and inferring functions with a novel three dimensional Yau Hausdorff method

Kun Tian Tsinghua University Xin Zhao Tsinghua University Yuning Zhang Tsinghua University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42003

[ Download ] [ 2019-04-27 21:26:35 uploaded by zhaox15 ] [ 422 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[24] A two-component Matched Interface and Boundary (MIB) regularization for charge singularity in implicit solvation

Weihua Geng Southern Methodist University, USA Shan Zhao University of Alabama, USA

Numerical Analysis and Scientific Computing Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2005.42001

Distinguished Paper Award in 2020

Journal of Computational Physics, 351, 25-39, 2017
[ Download ] [ 2020-05-29 10:51:58 uploaded by shanzhao ] [ 407 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[25] Deterministic and stochastic analysis for different types of regulations in the spontaneous emergence of cell polarity

Yue Liu City University of Hong Kong Wing-Cheong Lo City University of Hong Kong

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2104.42003

Chaos, Solitons and Fractals, 144, 110620, 2021
[ Download ] [ 2021-04-04 14:47:12 uploaded by wingclo ] [ 405 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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