Parameterizations of manifolds are widely applied to the fields of numerical partial differential equations and computer graphics. To this end, in recent years several efficient and reliable numerical algorithms have been developed by different research groups for the computation of triangular and tetrahedral mesh parameterizations. However, it is still challenging when the topology of manifolds is nontrivial, e.g., the 3-manifold of a topological solid torus. In this paper, we propose a novel volumetric stretch energy minimization algorithm for volume-preserving parameterizations of toroidal polyhedra with a single boundary being mapped to a standard torus. In addition, the algorithm can also be used to compute the equiareal mapping between a genus-one closed surface and the standard torus. Numerical experiments indicate that the developed algorithm is effective and performs well on the bijectivity of the mapping. Applications on manifold registrations and partitions are demonstrated to show the robustness of our algorithms.

Computing geodesic distances on triangle meshes is a fundamental problem in computational geometry and computer graphics. To date, two notable classes of algorithms, the Mitchell-Mount-Papadimitriou (MMP) algorithm and the Chen-Han (CH) algorithm, have been proposed. Although these algorithms can compute exact geodesic distances if numerical computation is exact, they are computationally expensive, which diminishes their usefulness for large-scale models and/or time-critical applications. In this paper, we propose the fast wavefront propagation (FWP) framework for improving the performance of both the MMP and CH algorithms. Unlike the original algorithms that propagate only a single window (a data structure locally encodes geodesic information) at each iteration, our method organizes windows with a bucket data structure so that it can process a large number of windows simultaneously without compromising wavefront quality. Thanks to its macro nature, the FWP method is less sensitive to mesh triangulation than the MMP and CH algorithms. We evaluate our FWP-based MMP and CH algorithms on a wide range of large-scale real-world models. Computational results show that our method can improve the speed by a factor of 3-10.

Detecting deformities on objects is a typical topic in shape analysis, and has much applications such as abnormalities detection in medical imaging (e.g. growth of tumor, spread of cancer). While many algorithms are already well-established in a 2-dimensional case when the object is indeed a surface, a model that still performs well in the general n-dimensional case is still missing. It is our goal in this paper to complete this missing piece, by introducing an indicator in order to effectively distinguish between normal and abnormal deformities. The proposed framework is closely related to the classic 2-dimensional conformal geometry and quasi-conformal geometry. In this work, we model abnormal deformations by anisotropic deformations. Given any two objects of the same dimension (with landmark constraints in between), we define the Anisotropic Indicator, a locally defined real-valued function on the original object, which demonstrates the abnormalities in the deformation between them. Both global and local features about the abnormalities between the two objects can be tracked by analyzing the indicator. We tested the algorithm by detecting deformations on synthetic data and real data, and results show that our algorithm can detect deformations of different types and degrees.

Presented in this paper is a sweepline algorithm to compute the Voronoi diagram of a set of circles in a two-dimensional Euclidean space. The radii of the circles are non-negative and not necessarily equal. It is allowed that circles intersect each other, and a circle contains others. The proposed algorithm constructs the correct Voronoi diagram as a sweepline moves on the plane from top to bottom. While moving on the plane, the sweepline stops only at certain event points where the topology changes occur for the Voronoi diagram being constructed. The worst-case time complexity of the proposed algorithm is $O((n+m)log n)$, where $n$ is the number of input circles, and $m$ is the number of intersection points among circles. As $m$ can be $O(n^22)$, the presented algorithm is optimal with $O(n^2 log n) $ worst-case time complexity.

We develop a new algorithm to automatically register hippocampal (HP) surfaces with complete geometric matching, avoiding the need to manually label landmark features. A good registration depends on a reasonable choice of shape energy that measures the dissimilarity between surfaces. In our work, we first propose a complete shape index using the Beltrami coefficient and curvatures, which measures subtle local differences. The proposed shape energy is zero if and only if two shapes are identical up to a rigid motion. We then seek the best surface registration by minimizing the shape energy. We propose a simple representation of surface diffeomorphisms using Beltrami coefficients, which simplifies the optimization process. We then iteratively minimize the shape energy using the proposed Beltrami Holomorphic flow (BHF) method. Experimental results on 212 HP of normal and diseased (Alzheimer's disease) subjects show our proposed algorithm is effective in registering HP surfaces with complete geometric matching. The proposed shape energy can also capture local shape differences between HP for disease analysis.