In this paper we propose a finite element time-domain method for modeling the optical black holes (OBHs) coupled with the perfectly matched layer (PML) technique. Stability analysis is carried out for the proposed scheme. Simulations of cylindrical, elliptical and square black holes demonstrate that our method is quite effective in modeling OBHs in time domain. To our best knowledge, this is the first OBHs simulation realized by the finite element time-domain method.

We investigate mirror symmetry for toric Calabi-Yau manifolds from the perspective of the SYZ conjecture. Starting with a non-toric special Lagrangian torus fibration on a toric Calabi-Yau manifold $X$, we construct a complex manifold $\check{X}$ using T-duality modified by quantum corrections. These corrections are encoded by Fourier transforms of generating functions of certain open Gromov-Witten invariants. We conjecture that this complex manifold $\check{X}$, which belongs to the Hori-Iqbal-Vafa mirror family, is inherently written in canonical flat coordinates. In particular, we obtain an enumerative meaning for the (inverse) mirror maps, and this gives a geometric reason for why their Taylor series expansions in terms of the K\"ahler parameters of $X$ have integral coefficients. Applying the results in \cite{Chan10} and \cite{LLW10}, we compute the open Gromov-Witten invariants in terms of local BPS invariants and give evidences of our conjecture for several 3-dimensional examples including $K_{\proj^2}$ and $K_{\proj^1\times\proj^1}$.

The notion of central stability was first formulated for sequences of representations of the symmetric groups by Putman. A categorical reformulation was subsequently given by Church, Ellenberg, Farb, and Nagpal using the notion of FI-modules, where FI is the category of finite sets and injective maps. We extend the notion of central stability from FI to a wide class of categories, and prove that a module is presented in finite degrees if and only if it is centrally stable. We also introduce the notion of d-step central stability, and prove that if the ideal of relations of a category is generated in degrees at most d, then every module presented in finite degrees is d-step centrally stable.

We construct a virus database called VirusDB (http://yaulab.math.tsinghua.edu.cn/VirusDB/) and an online inquiry system to serve people who are interested in viral classification and prediction. The database stores all viral genomes, their corresponding natural vectors, and the classification information of the single/multiple-segmented viral reference sequences downloaded from National Center for Biotechnology Information. The online inquiry system serves the purpose of computing natural vectors and their distances based on submitted genomes, providing an online interface for accessing and using the database for viral classification and prediction, and back-end processes for automatic and manual updating of database content to synchronize with GenBank. Submitted genomes data in FASTA format will be carried out and the prediction results with 5 closest neighbors and their classifications will be returned by email. Considering the one-to-one correspondence between sequence and natural vector, time efficiency, and high accuracy, natural vector is a significant advance compared with alignment methods, which makes VirusDB a useful database in further research.

In this paper, we investigate the topology of a class of non-Kähler compact complex manifolds generalizing that of Hopf and Calabi-Eckmann manifolds. These manifolds are diffeomorphic to special systems of real quadrics$C$^{$n$}which are invariant with respect to the natural action of the real torus ($S$^{1})^{$n$}onto$C$^{$n$}. The quotient space is a simple convex polytope. The problem reduces thus to the study of the topology of certain real algebraic sets and can be handled using combinatorial results on convex polytopes. We prove that the homology groups of these compact complex manifolds can have arbitrary amount of torsion so that their topology is extremely rich. We also resolve an associated wall-crossing problem by introducing holomorphic equivariant elementary surgeries related to some transformations of the simple convex polytope. Finally, as a nice consequence, we obtain that affine non-Kähler compact complex manifolds can have arbitrary amount of torsion in their homology groups, contrasting with the Kähler situation.