Almost toric manifolds form a class of singular Lagrangian fibered symplectic manifolds that include both toric manifolds and the K3 surface. We classify closed almost toric four-manifolds up to diffeomorphism and indicate precisely the structure of all almost toric fibrations of closed symplectic four-manifolds. A key step in the proof is a geometric classification of the singular integral affine structures that can occur on the base of an almost toric fibration of a closed four-manifold. As a byproduct we provide a geometric explanation for why a generic Lagrangian fibration over the two-sphere must have 24 singular fibers.

Let $(\hat X,T^{1,0}\hat X)$ be a compact orientable CR embeddable three dimensional strongly pseudoconvex CR manifold, where $T^{1,0}\hat X$ is a CR structure on $\hat X$. Fix a point $p\in\hat X$ and take a global contact form $\hat\theta$ so that $\hat\theta$ is asymptotically flat near $p$. Then $(\hat X,T^{1,0}\hat X,\hat\theta )$ is a pseudohermitian $3$-manifold. Let $G_p\in C^\infty(\hat X\setminus\set{p})$, $G_p > 0$, with $G_p(x)\sim\vartheta(x,p)^{-2}$ near $p$, where $\vartheta(x,y)$ denotes the natural pseudohermitian distance on $\hat X$. Consider the new pseudohermitian $3$-manifold with a blow-up of contact form $(\hat X\setminus\set{p},T^{1,0}\hat X,G^2_p\hat\theta)$ and let $\Box_{b}$ denote the corresponding Kohn Laplacian on $\hat X\setminus\set{p}$. In this paper, we prove that the weighted Kohn Laplacian $G^2_p\Box_b$ has closed range in $L^2$ with respect to the weighted volume form $G^2_p\hat\theta\wedge d\hat\theta$, and that the associated partial inverse and the Szeg\"{o} projection enjoy some regularity properties near $p$. As an application, we prove the existence of some special functions in the kernel of $\Box_{b}$ that grow at a specific rate at $p$. The existence of such functions provides an important ingredient for the proof of a positive mass theorem in 3-dimensional CR geometry by Cheng-Malchiodi-Yang \cite{CMY}.

In this paper we obtain a stability theorem of generalized K¨ahler structures with one pure spinor under small deformations of generalized complex structures. (This is analogous to the stability theorem of K¨ahler manifolds by Kodaira-Spencer.) We apply the stability theorem to a class of compact K¨ahler manifolds which admits deformations to generalized complex manifolds and obtain non-trivial generalized K¨ahler structures on Fano surfaces and toric K¨ahler manifolds. In particular, we show that every nonzero holomorphic Poisson structure on a K¨ahler manifold induces deformations of non-trivial generalized K¨ahler structures.

Numerical encoding plays an important role in DNA sequence analysis via computational methods, in which numerical values are associated with corresponding symbolic characters. After numerical representation, digital signal processing methods can be exploited to analyze DNA sequences. To reflect the biological properties of the original sequence, it is vital that the representation is one-to-one. Chaos Game Representation (CGR) is an iterative mapping technique that assigns each nucleotide in a DNA sequence to a respective position on the plane that allows the depiction of the DNA sequence in the form of image. Using CGR, a biological sequence can be transformed one-to-one to a numerical sequence that preserves the main features of the original sequence. In this research, we propose to encode DNA sequences by considering 2D CGR coordinates as complex numbers, and apply digital signal processing methods to analyze their evolutionary relationship. Computational experiments indicate that this approach gives comparable results to the state-of-the-art multiple sequence alignment method, Clustal Omega, and is significantly faster. The MATLAB code for our method can be accessed from: www.mathworks.com/matlabcentral/fileexchange/57152

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