In this paper, we introduce multiscale persistent functions for biomolecular structure characterization. The essential idea is to combine our multiscale rigidity functions with persistent homology analysis, so as to construct a series of multiscale persistent functions, particularly multiscale persistent entropies, for structure characterization. To clarify the fundamental idea of our method, the multiscale persistent entropy model is discussed in great detail. Mathematically, unlike the previous persistent entropy or topological entropy, a special resolution parameter is incorporated into our model. Various scales can be achieved by tuning its value. Physically, our multiscale persistent entropy can be used in conformation entropy evaluation. More specifically, it is found that our method incorporates in it a natural classification scheme. This is achieved through a density filtration of a multiscale rigidity function built from bond and/or dihedral angle distributions. To further validate our model, a systematical comparison with the traditional entropy evaluation model is done. It is found that our model is able to preserve the intrinsic topological features of biomolecular data much better than traditional approaches, particularly for resolutions in the mediate range. Moreover, our method can be successfully used in protein classification. For a test database with around nine hundred proteins, a clear separation between all-alpha and all-beta proteins can be achieved, using only the dihedral and pseudo-bond angle information. Finally, a special protein structure index (PSI) is proposed, for the first time, to describe the "regularity" of protein structures. Essentially, PSI can be used to describe the "regularity" information in any systems.

We show that the standard graded cover of the well-known category $\mathcal{O}$ of Bernstein–Gelfand–Gelfand can be characterized by its compatibility with the action of the center of the enveloping algebra.

Homology theory relative to classes of objects other than those of projective or injective objects in abelian categories has been widely studied in the last years, giving a special relevance to Gorenstein homological algebra. We prove the existence of Gorenstein flat precovers in any locally finitely presented Grothendieck category in which the class of flat objects is closed under extensions, the existence of Gorenstein injective preenvelopes in any locally noetherian Grothendieck category in which the class of all Gorenstein injective objects is closed under direct products, and the existence of special Gorenstein injective preenvelopes in locally noetherian Grothendieck categories with a generator lying in the left orthogonal class to that of Gorenstein injective objects.

We propose the notion of partial resolution of a ring, which is by definition the endomorphism ring of a certain generator of the given ring. We prove that the singularity category of the partial resolution is a quotient of the singularity category of the given ring. Consequences and examples are given.

An important goal in studying the relations between unitary VOAs and conformal nets is to prove the equivalence of their ribbon categories. In this article, we prove this conjecture for many familiar examples. Our main idea is to construct new structures associated to conformal nets: the categorical extensions.