The skeleton of a 2D shape is an important geometric structure in pattern analysis and computer vision. In this paper we study the skeleton of a 2D shape in a two-manifold M, based on a geodesic metric. We present a formal definition of the skeleton S(\Omega) for a shape V in M and show several properties that make S(\Omega) distinct from its Euclidean counterpart in R^2. We further prove that for a shape sequence {\Omega_i} that converge to a shape V in M, the mapping \Omega\rightarrow S(\Omega_i) is lower semi-continuous. A direct application of this result is that we can use a set P of sample points to approximate the boundary of a 2D shape V in M, and the Voronoi diagram of P inside \Omega\subset M gives a good approximation to the skeleton S(\Omega). Examples of skeleton computation in topography and brain morphometry are illustrated.

We address the problem of surface inpainting, which aims to fill in holes or missing regions on a Riemann surface based on its surface geometry. In practical situation, surfaces obtained from range scanners often have holes where the 3D models are incomplete. In order to analyze the 3D shapes effectively, restoring the incomplete shape by filling in the surface holes is necessary. In this paper, we propose a novel conformal approach to inpaint surface holes on a Riemann surface based on its surface geometry. The basic idea is to represent the Riemann surface using its conformal factor and mean curvature. According to Riemann surface theory, a Riemann surface can be uniquely determined by its conformal factor and mean curvature up to a rigid motion. Given a Riemann surface S, its mean curvature H and conformal factor λ can be computed easily through its conformal parameterization. Conversely, given λ and H, a Riemann surface can be uniquely reconstructed by solving the Gauss-Codazzi equation on the conformal parameter domain. Hence, the conformal factor and the mean curvature are two geometric quantities fully describing the surface. With this λ-H representation of the surface, the problem of surface inpainting can be reduced to the problem of image inpainting of λ and H on the conformal parameter domain. Once λ and H are inpainted, a Riemann surface can be reconstructed which effectively restores the 3D surface with missing holes. Since the inpainting model is based on the geometric quantities λ and H, the restored surface follows the surface geometric pattern. We test the proposed algorithm on synthetic data as well as real surface data. Experimental results show that our proposed method is an effective surface inpainting algorithm to fill in surface holes on an incomplete 3D models based their surface geometry.

Detecting deformities on objects is a typical topic in shape analysis, and has much applications such as abnormalities detection in medical imaging (e.g. growth of tumor, spread of cancer). While many algorithms are already well-established in a 2-dimensional case when the object is indeed a surface, a model that still performs well in the general n-dimensional case is still missing. It is our goal in this paper to complete this missing piece, by introducing an indicator in order to effectively distinguish between normal and abnormal deformities. The proposed framework is closely related to the classic 2-dimensional conformal geometry and quasi-conformal geometry. In this work, we model abnormal deformations by anisotropic deformations. Given any two objects of the same dimension (with landmark constraints in between), we define the Anisotropic Indicator, a locally defined real-valued function on the original object, which demonstrates the abnormalities in the deformation between them. Both global and local features about the abnormalities between the two objects can be tracked by analyzing the indicator. We tested the algorithm by detecting deformations on synthetic data and real data, and results show that our algorithm can detect deformations of different types and degrees.

Structured light system using a digital video projector is increasingly used for a 3-D shape measurement because of its digital nature. However, the nonlinear gamma of the projector causes the projected fringe patterns to be non-sinusoidal, which results in phase error therefore shape measurement error. Previous work showed that, by using a small look-up-table (LUT), this type of phase error can be reduced significantly for a three-step phase-shifting algorithm. In this research, we prove that this type of phase error compensation method is not limited to a three-step phase-shifting algorithm. It is generic for any phase-shifting algorithm. The phase error compensation algorithm is able to theoretically eliminate the phase error caused by the gamma of the projector completely. It is based on our finding that in phase domain, the phase error due to the projector's gamma is preserved for arbitrary object's surface

We develop a new algorithm to automatically register hippocampal (HP) surfaces with complete geometric matching, avoiding the need to manually label landmark features. A good registration depends on a reasonable choice of shape energy that measures the dissimilarity between surfaces. In our work, we first propose a complete shape index using the Beltrami coefficient and curvatures, which measures subtle local differences. The proposed shape energy is zero if and only if two shapes are identical up to a rigid motion. We then seek the best surface registration by minimizing the shape energy. We propose a simple representation of surface diffeomorphisms using Beltrami coefficients, which simplifies the optimization process. We then iteratively minimize the shape energy using the proposed Beltrami Holomorphic flow (BHF) method. Experimental results on 212 HP of normal and diseased (Alzheimer's disease) subjects show our proposed algorithm is effective in registering HP surfaces with complete geometric matching. The proposed shape energy can also capture local shape differences between HP for disease analysis.