Technological innovations have revolutionized the process of scientific research and knowledge discovery. The availability of massive data and challenges from frontiers of research and development have reshaped statistical thinking, data analysis and theoretical studies. The challenges of high-dimensionality arise in diverse fields of sciences and the humanities, ranging from computational biology and health studies to financial engineering and risk management. In all of these fields, variable selection and feature extraction are crucial for knowledge discovery. We first give a comprehensive overview of statistical challenges with high dimensionality in these diverse disciplines. We then approach the problem of variable selection and feature extraction using a unified framework: penalized likelihood methods. Issues relevant to the choice of penalty functions are addressed. We demonstrate that for a host of statistical problems, as long as the dimensionality is not excessively large, we can estimate the model parameters as well as if the best model is known in advance. The persistence property in risk minimization is also addressed. The applicability of such a theory and method to diverse statistical problems is demonstrated. Other related problems with high-dimensionality are also discussed.

We present a new estimator for precision matrix in high dimensional Gaussian graphical models. At the core of the proposed estimator is a collection of node-wise linear regression with nonconvex penalty. In contrast to existing estimators for Gaussian graphical models with O (s log d/n) estimation error bound in terms of spectral norm, where s is the maximum degree of a graph, the proposed estimator could attain O (s/ n+ log d/n) spectral norm based convergence rate in the best case, and it is no worse than exiting estimators in general. In addition, our proposed estimator enjoys the oracle property under a milder condition than existing estimators. We show through extensive experiments on both synthetic and real datasets that our estimator outperforms the state-of-the-art estimators.

This paper studies a weighted local linear regression smoother for longitudinal/clustered data, which takes a form similar to the classical weighted least squares estimate. As a hybrid of the methods of Chen and Jin (2005) and Wang (2003), the proposed local linear smoother maintains the advantages of both methods in computational and theoretical simplicity, variance minimization and bias reduction. Moreover, the proposed smoother is optimal in the sense that it attains linear minimax efficiency when the within-cluster correlation is correctly specified. In the special case that the joint density of covariates in a cluster exists and is continuous, any working within-cluster correlation would lead to linear minimax efficiency for the proposed method.

Regularity properties such as the incoherence condition, the restricted isometry property, compatibility, restricted eigenvalue and iq sensitivity of covariate matrices play a pivotal role in high-dimensional regression and compressed sensing. Yet, like computing the spark of a matrix, we first show that it is NP-hard to check the conditions involving all submatrices of a given size.

Cryo-electron microscopy (cryo-EM) has recently emerged as a powerful tool for obtaining three-dimensional (3D) structures of biological macromolecules in native states. A minimum cryo-EM image data set for deriving a meaningful reconstruction is comprised of thousands of randomly orientated projections of identical particles photographed with a small number of electrons. The computation of 3D structure from 2D projections requires clustering, which aims to enhance the signal to noise ratio in each view by grouping similarly oriented images. Nevertheless, the prevailing clustering techniques are often compromised by three characteristics of cryo-EM data: high noise content, high dimensionality and large number of clusters. Moreover, since clustering requires registering images of similar orientation into the same pixel coordinates by 2D alignment, it is desired that the clustering algorithm can label misaligned images as outliers. Herein, we introduce a clustering algorithm γ-SUP to model the data with a q-Gaussian mixture and adopt the minimum γ-divergence for estimation, and then use a self-updating procedure to obtain the numerical solution. We apply γ-SUP to the cryo-EM images of two benchmark macromolecules, RNA polymerase II and ribosome. In the former case, simulated images were chosen to decouple clustering from alignment to demonstrate γ-SUP is more robust to misalignment outliers than the existing clustering methods used in the cryo-EM community. In the latter case, the clustering of real cryo-EM data by our γ-SUP method eliminates noise in many views to reveal true structure features of ribosome at the projection level.