In this article, we propose a novel approach to construct macroscopic balance equations and constitutive equations describing various irreversible phenomena. It is based on the general principles of non-equilibrium thermodynamics and consists of four basic steps: picking suitable state variables, choosing a strictly concave entropy function, properly separating entropy fuxes and production rates, and determining a dissipation matrix. Our approach takes advantage of both extended irreversible thermodynamics and GENERIC formalisms and shows a direct correspondence with Levermore’s moment-closure hierarchies for the Boltzmann equation. As a direct application, a new ten-moment model beyond the classical hierarchies is constructed and is shown to recover the Euler equations in the equilibrium state. These interesting results may put various macroscopic modeling approaches, starting from the general principles of non-equilibrium thermodynamics, on a solid microscopic foundation based on the Boltzmann equation.

We investigate the fractional Schrödinger equation with a periodic PT-symmetric potential. In the inverse space, the problem transfers into a first-order nonlocal frequency-delay partial differential equation. We show that at a critical point, the band structure becomes linear and symmetric in the one-dimensional case, which results in a nondiffracting propagation and conical diffraction of input beams. If only one channel in the periodic potential is excited, adjacent channels become uniformly excited along the propagation direction, which can be used to generate laser beams of high power and narrow width. In the two-dimensional case, there appears conical diffraction that depends on the competition between the fractional Laplacian operator and the PT-symmetric potential. This investigation may find applications in novel on-chip optical devices.

We are concerned with progressive waves propagating on a two-dimensional conducting fluid when a uniform electric field is applied in the direction perpendicular to the undisturbed free surface. The competing effects of gravity, surface tension, and electrically induced forces are investigated using both analytical and numerical techniques for an inviscid and incompressible fluid flowing irrotationally. We simplify the full Euler equations by expanding and truncating the Dirichlet-Neumann operators in the Hamiltonian formulation of the problem. The numerical results show that when the electric parameter is in a certain range, the bifurcation structure near the minimum of the phase speed is rich with Stokes, solitary, generalized solitary, and dark solitary waves. In addition to symmetric solutions, asymmetric solitary waves featuring a multi-packet structure are found to occur along a branch of asymmetric generalized solitary waves that itself bifurcates from Stokes waves of finite amplitude. The detailed bifurcation diagrams, together with typical wave profiles, are presented.

Omicron, the latest SARS-CoV-2 Variant of Concern (VOC), first appeared in Africa in November 2021. At present, the question of whether a new VOC will out-compete the currently predominant variant is important for governments seeking to determine if current surveillance strategies and responses are appropriate and reasonable. Based on both virus genomes and daily-confirmed cases, we compare the additive differences in growth rates and reproductive numbers (R_0) between VOCs and their predominant variants through a Bayesian framework and phylo-dynamics analysis. Faced with different variants, we evaluate the effects of current policies and vaccinations against VOCs and predominant variants. The model also predicts the date on which a VOC may become dominant based on simulation and real data in the early stage. The results suggest that the overall additive difference in growth rates of B.1.617.2 and predominant variants was 0.44 (95% confidence interval, 95% CI: −0.38, 1.25) in February 2021, and that the VOC had a relatively high R_0. The additive difference in the growth rate of BA.1 in the United Kingdom was 6.82 times the difference between Delta and Alpha, and the model successfully predicted the dominating process of Alpha, Delta and Omicron. Current vaccination strategies remain similarly effective against Delta compared to the previous variants. Our model proposes a reliable Bayesian framework to predict the spread trends of VOCs based on early-stage data, and evaluates the effects of public health policies, which may help us better prepare for the upcoming Omicron variant, which is now spreading at an unprecedented speed.

A comprehensive description of human genomes is essential for understanding human evolution and relationships between modern populations. However, most published literature focuses on local alignment comparison of several genes rather than the complete evolutionary record of individual genomes. Combining with data from the 1,000 Genomes Project, we successfully reconstructed 2,504 individual genomes and propose Divided Natural Vector method to analyze the distribution of nucleotides in the genomes. Comparisons based on autosomes, sex chromosomes and mitochondrial genomes reveal the genetic relationships between populations, and different inheritance pattern leads to different phylogenetic results. Results based on mitochondrial genomes confirm the “out-of-Africa” hypothesis and assert that humans, at least females, most likely originated in eastern Africa. The reconstructed genomes are stored on our server and can be further used for any genome-scale analysis of humans (http://yaulab.math.tsinghua.edu.cn/2022_1000genomesprojectdata/). This project provides the complete genomes of thousands of individuals and lays the groundwork for genome-level analyses of the genetic relationships between populations and the origin of humans.