The free-living SAR11 clade is a globally abundant group of oceanic Alphaproteobacteria, with small genome sizes and rich genomic A+T content. However, the taxonomy of SAR11 has become controversial recently. Some researchers argue that the position of SAR11 is a sister group to Rickettsiales. Other researchers advocate that SAR11 is located within free-living lineages of Alphaproteobacteria. Here, we use the natural vector representation method to identify the evolutionary origin of the SAR11 clade. This alignment-free method does not depend on any model assumptions. With this approach, the correspondence between proteome sequences and their natural vectors is one-to-one. After fixing a set of proteins, each bacterium is represented by a set of vectors. The Hausdorff distance is then used to compute the dissimilarity distance between two bacteria. The phylogenetic tree can be reconstructed based on these distances. Using our method, we systematically analyze four data sets of alphaproteobacterial proteomes in order to reconstruct the phylogeny of Alphaproteobacteria. From this we can see that the phylogenetic position of the SAR11 group is within a group of other free-living lineages of Alphaproteobacteria.

Let$u$_{$n$}be the$n$th term of a Lucas sequence or a Lehmer sequence. In this article we shall establish an estimate from below for the greatest prime factor of$u$_{$n$}which is of the form$n$exp(log$n$/104 log log$n$). In doing so, we are able to resolve a question of Schinzel from 1962 and a conjecture of Erdős from 1965. In addition we are able to give the first general improvement on results of Bang from 1886 and Carmichael from 1912.

In this note, we discuss the notion of symmetric self-duality of shaded planar algebras, which allows us to lift shadings on subfactor planar algebras to obtain Z/2Z-graded unitary fusion categories. This finishes the proof that there are unitary fusion categories with fusion graphs 4442 and 3333.

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