Persistent homology is constrained to purely topological persistence, while multiscale graphs account only for geometric information. This work introduces persistent spectral theory to create a unified low-dimensional multiscale paradigm for revealing topological persistence and extracting geometric shapes from high-dimensional datasets. For a point-cloud dataset, a filtration procedure is used to generate a sequence of chain complexes and associated families of simplicial complexes and chains, from which we construct persistent combinatorial Laplacian matrices. We show that a full set of topological persistence can be completely recovered from the harmonic persistent spectra, that is, the spectra that have zero eigenvalues, of the persistent combinatorial Laplacian matrices. However, non-harmonic spectra of the Laplacian matrices induced by the filtration offer another powerful tool for data analysis, modeling, and prediction. In this work, fullerene stability is predicted by using both harmonic spectra and non-harmonic persistent spectra, while the latter spectra are successfully devised to analyze the structure of fullerenes and model protein flexibility, which cannot be straightforwardly extracted from the current persistent homology. The proposed method is found to provide excellent predictions of the protein B-factors for which current popular biophysical models break down.

By studying the heat semigroup, we prove Li-Yau type estimates for bounded and positive solutions of the heat equation on graphs, under the assumption of the curvature-dimension inequality $CDE'(n,0)$, which can be consider as a notion of curvature for graphs. Furthermore, we derive that if a graph has non-negative curvature then it has the volume doubling property, from this we can prove the Gaussian estimate for heat kernel, and then Poincar\'{e} inequality and Harnack inequality. As a consequence, we obtain that the dimension of space of harmonic functions on graphs with polynomial growth is finite, which original is a conjecture of Yau on Riemannian manifold proved by Colding and Minicozzi. Under the assumption of positive curvature on graphs, we derive the Bonnet-Myers type theorem that the diameter of graphs is finite and bounded above in terms of the positive curvature by proving some Log Sobolev inequalities.

The spectral radius of a graph is the largest eigenvalue of the adjacency matrix of the graph. Let T(n,D
l) be the tree which minimizes the spectral radius of all trees of order n with exactly l vertices of maximum degree D
. In this paper, T(n,D
l) is determined for D=3, and for l<= 3 and n large enough. It is proven that for sufficiently large n, T(n, 3, l) is a caterpillar with (almost) uniformly distributed legs, T(n,D
2) is a dumbbell, and T(n,
D,3) is a tree consisting of three distinct stars of order D
connected by three disjoint paths of (almost) equal length from their centers to a common vertex. The unique tree with the largest spectral radius among all such trees is also determined. These extend earlier results of Lov´asz and Pelik´an, Simi´c and To˘si´c, Wu, Yuan and Xiao, and Xu, Lin and Shu.

In this paper, we show that every $(2^{n-1}+1)$-vertex induced subgraph of the $n$-dimensional cube graph has maximum degree at least $\sqrt{n}$. This result is best possible, and improves a logarithmic lower bound shown by Chung, F\"uredi, Graham and Seymour in 1988. As a direct consequence, we prove that the sensitivity and degree of a boolean function are polynomially related, solving an outstanding foundational problem in theoretical computer science, the Sensitivity Conjecture of Nisan and Szegedy.

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