Quantitatively identifying direct dependencies between variables is an important task in data analysis, in particular for reconstructing various types of networks and causal relations in science and engineering. One of the most widely used criteria is partial correlation, but it can only measure linearly direct association and miss nonlinear associations. However, based on conditional independence, conditional mutual information (CMI) is able to quantify nonlinearly direct relationships among variables from the observed data, superior to linear measures, but suffers from a serious problem of underestimation, in particular for those variables with tight associations in a network, which severely limits its applications. In this work, we propose a new concept, “partial independence,” with a new measure, “part mutual information” (PMI), which not only can overcome the problem of CMI but also retains the quantification properties of both mutual information (MI) and CMI. Specifically, we first defined PMI to measure nonlinearly direct dependencies between variables and then derived its relations with MI and CMI. Finally, we used a number of simulated data as benchmark examples to numerically demonstrate PMI features and further real gene expression data from Escherichia coli and yeast to reconstruct gene regulatory networks, which all validated the advantages of PMI for accurately quantifying nonlinearly direct associations in networks.

We establish necessary and sufficient conditions for consistent root reconstruction in continuous-time Markov models with countable state space on bounded-height trees. Here a root state estimator is said to be consistent if the probability that it returns to the true root state converges to 1 as the number of leaves tends to infinity. We also derive quantitative bounds on the error of reconstruction. Our results answer a question of Gascuel and Steel [GS10] and have implications for ancestral sequence reconstruction in a classical evolutionary model of nucleotide insertion and deletion [TKF91].

We study the well-posedness of a unified system of coupled forward-backward stochastic differential equations (FB-SDEs) with Levy jumps and double completely-S skew reflections. Owing to the reflections, the solution to an embedded Skorohod problem may be not unique, i.e., bifurcations may occur at reflection boundaries, the well-known contraction mapping approach can not be extended directly to solve our problem. Thus, we develop a weak convergence method to prove the well-posedness of an adapted 6-tuple weak solution in the sense of distribution to the unified system. The proof heavily depends on newly established Malliavin calculus for vector-valued Levy processes together with a generalized linear growth and Lipschitz condition that guarantees the well-posedness of the unified system even under a random environment. Nevertheless, if a more strict boundary condition is imposed, i.e., the spectral radii in certain sense for the reflections are strictly less than the unity, a unique adapted 6-tuple strong solution in the sense of sample pathwise is concerned. In addition, as applications and economical studies of our unified system, we also develop new techniques including deriving a generalized mutual information formula for signal processing over possible non-Gaussian channels with multi-input multi-output (MIMO) antennas and dynamics driven by Levy processes.

A paper was published (Harsha and Subrahamanian Moosath, 2014) in which the authors claimed to have discovered an extension to Amari's \(\alpha\)-geometry through a general monotone embedding function. It will be pointed out here that this so-called \((F, G)\)-geometry (which includes \(F\)-geometry as a special case) is identical to Zhang's (2004) extension to the \(\alpha\)-geometry, where the name of the pair of monotone embedding functions \(\rho\) and \(\tau\) were used instead of \(F\) and \(H\) used in Harsha and Subrahamanian Moosath (2014). Their weighting function \(G\) for the Riemannian metric appears cosmetically due to a rewrite of the score function in log-representation as opposed to \((\rho, \tau)\)-representation in Zhang (2004). It is further shown here that the resulting metric and \(\alpha\)-connections obtained by Zhang (2004) through arbitrary monotone embeddings is a unique extension of the \(\alpha\)-geometric structure. As a special case, Naudts' (2004) \(\phi\)-logarithm embedding (using the so-called \(\log_\phi\) function) is recovered with the identification \(\rho=\phi, \, \tau=\log_\phi\), with \(\phi\)-exponential \(\exp_\phi\) given by the associated convex function linking the two representations.

An affine invariant p-th moment measure is defined for a random vector and used to prove sharp moment-entropy inequalities that are more general and stronger than standard moment-entropy inequalities.