We establish theoretical recovery guarantees of a family of Riemannian optimization algorithms for low rank matrix recovery, which is about recovering an mimes n rank mimes n matrix from mimes n number of linear measurements. The algorithms are first interpreted as iterative hard thresholding algorithms with subspace projections. Based on this connection, we show that provided the restricted isometry constant mimes n of the sensing operator is less than mimes n, the Riemannian gradient descent algorithm and a restarted variant of the Riemannian conjugate gradient algorithm are guaranteed to converge linearly to the underlying rank mimes n matrix if they are initialized by one step hard thresholding. Empirical evaluation shows that the algorithms are able to recover a low rank matrix from nearly the minimum number of measurements necessary.

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In this paper, we apply discontinuous Galerkin (DG) methods to solve two model equations: Krause's consensus models and pressureless Euler equations. These two models are used to describe the collisions of particles, and the distributions can be identified as density functions. If the particles are placed at a single point, then the density function turns out to be a $\delta$-function and is difficult to be well approximated numerically. In this paper, we use DG method to approximate such a singularity and demonstrate the good performance of the scheme. Since the density functions are always positive, we apply a positivity-preserving limiter to them. Moreover, for pressureless Euler equations, the velocity satisfies the maximum principle. We also construct special limiters to fulfill this requirement.

We present a new Matched Interface and Boundary (MIB) regularization method for treating charge singularity in solvated biomolecules whose electrostatics are described by the Poisson–Boltzmann (PB) equation. In a regularization method, by decomposing the potential function into two or three components, the singular component can be analytically represented by the Green’s function, while other components possess a higher regularity. Our new regularization combines the efficiency of two-component schemes with the accuracy of the three-component schemes. Based on this regularization, a new MIB finite difference algorithm is developed for solving both linear and nonlinear PB equations, where the nonlinearity is handled by using the inexact-Newton’s method. Compared with the existing MIB PB solver based on a three-component regularization, the present algorithm is simpler to implement by circumventing the work to solve a boundary value Poisson equation inside the molecular interface and to compute related interface jump conditions numerically. Moreover, the new MIB algorithm becomes computationally less expensive, while maintains the same second order accuracy. This is numerically verified by calculating the electrostatic potential and solvation energy on the Kirkwood sphere on which the analytical solutions are available and on a series of proteins with various sizes.

The immersed boundary method has evolved into one of the most useful computational methods in studying fluid structure interaction. On the other hand, the immersed boundary method is also known to suffer from a severe timestep stability restriction when using an explicit time discretization. In this paper, we propose several efficient semi-implicit schemes to remove this stiffness from the immersed boundary method for the two-dimensional Stokes flow. First, we obtain a novel unconditionally stable semi-implicit discretization for the immersed boundary problem. Using this unconditionally stable discretization as a building block, we derive several efficient semi-implicit schemes for the immersed boundary problem by applying the small scale decomposition to this unconditionally stable discretization. Our stability analysis and extensive numerical experiments show that our semi-implicit schemes offer much better stability property than the explicit scheme. Unlike other implicit or semi-implicit schemes proposed in the literature, our semi-implicit schemes can be solved explicitly in the spectral space. Thus the computational cost of our semi-implicit schemes is comparable to that of an explicit scheme, but with a much better stability property.