Cryo-electron microscopy (cryo-EM) has recently emerged as a powerful tool for obtaining three-dimensional (3D) structures of biological macromolecules in native states. A minimum cryo-EM image data set for deriving a meaningful reconstruction is comprised of thousands of randomly orientated projections of identical particles photographed with a small number of electrons. The computation of 3D structure from 2D projections requires clustering, which aims to enhance the signal to noise ratio in each view by grouping similarly oriented images. Nevertheless, the prevailing clustering techniques are often compromised by three characteristics of cryo-EM data: high noise content, high dimensionality and large number of clusters. Moreover, since clustering requires registering images of similar orientation into the same pixel coordinates by 2D alignment, it is desired that the clustering algorithm can label misaligned images as outliers. Herein, we introduce a clustering algorithm γ-SUP to model the data with a q-Gaussian mixture and adopt the minimum γ-divergence for estimation, and then use a self-updating procedure to obtain the numerical solution. We apply γ-SUP to the cryo-EM images of two benchmark macromolecules, RNA polymerase II and ribosome. In the former case, simulated images were chosen to decouple clustering from alignment to demonstrate γ-SUP is more robust to misalignment outliers than the existing clustering methods used in the cryo-EM community. In the latter case, the clustering of real cryo-EM data by our γ-SUP method eliminates noise in many views to reveal true structure features of ribosome at the projection level.

We present a new estimator for precision matrix in high dimensional Gaussian graphical models. At the core of the proposed estimator is a collection of node-wise linear regression with nonconvex penalty. In contrast to existing estimators for Gaussian graphical models with O (s log d/n) estimation error bound in terms of spectral norm, where s is the maximum degree of a graph, the proposed estimator could attain O (s/ n+ log d/n) spectral norm based convergence rate in the best case, and it is no worse than exiting estimators in general. In addition, our proposed estimator enjoys the oracle property under a milder condition than existing estimators. We show through extensive experiments on both synthetic and real datasets that our estimator outperforms the state-of-the-art estimators.

Improving efficiency for regression coefficients and predicting trajectories of individuals are two important aspects in the analysis of longitudinal data. Both involve estimation of the covariance function. Yet challenges arise in estimating the covariance function of longitudinal data collected at irregular time points. A class of semiparametric models for the covariance function by that imposes a parametric correlation structure while allowing a nonparametric variance function is proposed. A kernel estimator for estimating the nonparametric variance function is developed. Two methods for estimating parameters in the correlation structurea quasi-likelihood approach and a minimum generalized variance methodare proposed. A semiparametric varying coefficient partially linear model for longitudinal data is introduced, and an estimation procedure for model coefficients using a profile weighted least squares approach

Ultrahigh-dimensional variable selection plays an increasingly important role in contemporary scientific discoveries and statistical research. Among others, Fan and Lv [JR Stat. Soc. Ser. B Stat. Methodol. 70 (2008) 849911] propose an independent screening framework by ranking the marginal correlations. They showed that the correlation ranking procedure possesses a sure independence screening property within the context of the linear model with Gaussian covariates and responses. In this paper, we propose a more general version of the independent learning with ranking the maximum marginal likelihood estimates or the maximum marginal likelihood itself in generalized linear models. We show that the proposed methods, with Fan and Lv [JR Stat. Soc. Ser. B Stat. Methodol. 70 (2008) 849911] as a very special case, also possess the sure screening property with vanishing false selection rate. The

Motivated by recent work on studying massive imaging data in various neuroimaging studies, we propose a novel spatially varying coefficient model (SVCM) to capture the varying association between imaging measures in a three-dimensional volume (or two-dimensional surface) with a set of covariates. Two stylized features of neuorimaging data are the presence of multiple piecewise smooth regions with unknown edges and jumps and substantial spatial correlations. To specifically account for these two features, SVCM includes a measurement model with multiple varying coefficient functions, a jumping surface model for each varying coefficient function, and a functional principal component model. We develop a three-stage estimation procedure to simultaneously estimate the varying coefficient functions and the spatial correlations. The estimation procedure includes a fast multiscale adaptive estimation and