This article considers experimental design based on the strategy of rerandomization to increase the efficiency in experiments. Two aspects of rerandomization are addressed. First, we propose a two-stage allocation sample scheme for randomization inference to the units in experiments that guarantees that the difference-in-mean estimator is an unbiased estimator of the sample average treatment effect for any experiment, conserves the exactness of randomization inference, and halves the time consumption of the rerandomization design. Second, we propose a rank-based covariate-balance measure which can take into account the estimated relative weight of each covariate. Several strategies for estimating these weights using pre-experimental data are proposed. Using Monte Carlo simulations, the proposed strategies are compared to complete randomization and Mahalanobis-based rerandomization. An empirical example is given where the power of a mean difference test of electricity consumption of 54 households is increased by 99%, in comparison to complete randomization, using one of the proposed designs based on high frequency longitudinal electricity consumption data. Supplementary materials for this article are available online.

Definitive screening designs (DSDs) are widely used for studying quantitative factors. However, DSDs constructed from different conference matrices are not equally good. We show DSDs using Paley’s conference matrices guarantee desirable performance (either optimal or near-optimal) under several important criteria.

Due to vast sequence divergence among different viral groups, sequence alignment is not directly applicable to genome-wide comparative analysis of viruses. More and more attention has been paid to alignment-free methods for whole genome comparison and phylogenetic tree reconstruction. Among alignment-free methods, the recently proposed ‘‘Natural Vector (NV) representation” has successfully been used to study the phylogeny of multi-segmented viruses based on a 12-dimensional genome space derived from the nucleotide sequence structure. But the preference of proteomes over genomes for the determination of viral phylogeny was not deeply investigated. As the translated products of genes, proteins directly form the shape of viral structure and are vital for all metabolic pathways. In this study, using the NV representation of a protein sequence along with the Hausdorff distance suitable to compare point sets, we construct a 60-dimensional protein space to analyze the evolutionary relationships of 4021 viruses by whole-proteomes in the current NCBI Reference Sequence Database (RefSeq). We also take advantage of the previously developed natural graphical representation to recover viral phylogeny. Our results demonstrate that the proposed method is efficient and accurate for classifying viruses. The accuracy rates of our predictions such as for Baltimore II viruses are as high as 95.9% for family labels, 95.7% for subfamily labels and 96.5% for genus labels. Finally, we discover that proteomes lead to better viral classification when reliable protein sequences are abundant. In other cases, the accuracy rates using proteomes are still comparable to that of genomes.

There is gained interest in understanding statistical inference under possibly non-sparse high-dimensional models. For a given component of the regression coefficient, we show that the difficulty of the problem depends on the sparsity of the corresponding row of the precision matrix of the covariates, not the sparsity of the regression coefficients. We develop new concepts of uniform and essentially uniform non-testability that allow the study of limitations of tests across a broad set of alternatives. Uniform non-testability identifies a collection of alternatives such that the power of any test, against any alternative in the group, is asymptotically at most equal to the nominal size of the test. Implications of the new constructions include new minimax testability results that in sharp contrast to the existing results, do not depend on the sparsity of the regression parameters. We identify new tradeoffs between testability and feature correlation. In particular, we show that in models with weak feature correlations minimax lower bound can be attained by a test whose power has the parametric rate regardless of the size of the model sparsity.

No abstract uploaded!