We show that in many examples the non-displaceability of Lagrangian submanifolds by Hamiltonian isotopy can be proved via Lagrangian Floer cohomology with non-unitary line bundle. The examples include all monotone Lagrangian torus fibers in a toric Fano manifold (which was also proven by Entov and Polterovich via the theory of symplectic quasi-states) and some non-monotone Lagrangian torus fibers.