Data Analysis, Bio-Statistics, Bio-Mathematics

[21] Fast and accurate genome comparison using genome images: The Extended Natural Vector Method

Shaojun Pei Tsinghua University Wenhui Dong Tsinghua University Xiuqiong Chen Tsinghua Univerisity Rong Lucy He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2004.42002

Molecular Phylogenetics and Evolution, 141, 106633
[ Download ] [ 2020-04-23 21:45:09 uploaded by psj17 ] [ 407 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[22] A novel alignment-free method for HIV-1 subtype classification

Lily He Tsinghua University Rui Dong Tsinghua University Rong Lucy He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2004.42001

Infection, Genetics and Evolution, 77, 104080, 2020.1
[ Download ] [ 2020-04-23 10:51:36 uploaded by RuiDong ] [ 347 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[23] G-sup: a clustering algorithm for cryo-electron microscopy images of asymmetric particles

Ting-Li Chen Institute of Statistical Science, Academia Sinica Dai-Ni Hsieh Institute of Statistical Science, Academia Sinica Hung Hung Institute of Epidemiology and Preventive Medicine I-Ping Tu Institute of Statistical Science, Academia Sinica Pei-Shien Wu Dept. of Biostatistics, Duke University Yi-Ming Wu Institute of Chemistry, Academia Sinica Wei-Hau Chang Institute of Chemistry, Academia Sinica Su-Yun Huang Institute of Statistical Science, Academia Sinica

Statistics Theory and Methods Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2004.33002

The Annals of Applied Statistics , 8, (1), 259-285, 2014
[ Download ] [ 2020-04-22 14:03:32 uploaded by ipingtu ] [ 275 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[24] A novel approach to clustering genome sequences using inter-nucleotide covariance

Rui Dong Tsinghua University Lily He Tsinghua University Rong Lucy He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1909.42002

Frontiers in Genetics, 10, (234), 234, 2019.4
[ Download ] [ 2019-09-15 13:55:12 uploaded by Stephenyau ] [ 459 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[25] Large-Scale Genome Comparison Based on Cumulative Fourier Power and Phase Spectra: Central Moment and Covariance Vector

Shaojun Pei Department of Mathematical Sciences, Tsinghua University, Beijing, PR China Rui Dong Department of Mathematical Sciences, Tsinghua University, Beijing, PR China Rong Lucy He Department of Biological Sciences, Chicago State University, Chicago, IL 60628, USA Stephen S.-T. Yau Department of Mathematical Sciences, Tsinghua University, Beijing, PR China

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1909.42001

Computational and Structural Biotechnology Journal, 17, 982-994, 2019.7
[ Download ] [ 2019-09-04 17:31:31 uploaded by Stephenyau ] [ 474 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[26] Whole genome single nucleotide polymorphism genotyping of Staphylococcus aureus

Changchuan Yin University of Illinois at Chicago Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1908.42001

2019.1
[ Download ] [ 2019-08-21 02:42:56 uploaded by cyinbox ] [ 558 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[27] An age-structured continuum model for myxobacteria

Pierre Degond Imperial College London Angelika Manhart New York University Hui Yu Tsinghua University

Fluid Dynamics and Shock Waves Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1906.14001

Mathematical Models and Methods in Applied Sciences, 28, (9), 1737–1770, 2018
[ Download ] [ 2019-06-26 11:22:58 uploaded by HuiYu ] [ 400 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[28] TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions

Zixuan Cang Michigan State University Guo-Wei Wei Michigan State University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42007

Best Paper Award in 2019

PLOS Computational Biology, 13, (7), e1005690, 2017.7
[ Download ] [ 2019-04-30 00:41:13 uploaded by cangzx ] [ 327 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[29] Randomly distributed embedding making short-term high-dimensional data predictable

Huanfei Man Soochow University Siyang Leng Fudan University Kazuyuki Aihara Tokyo University Wei Lin Fudan University Luonan Chen Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42006

Best Paper Award in 2019

Proceedings of the National Academy of Sciences of the United States of America, 115, (43), E9994-E10002, 2018.10
[ Download ] [ 2019-04-28 19:34:56 uploaded by wlinfudan ] [ 607 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[30] Convex hull analysis of evolutionary and phylogenetic relationships between biological groups

Kun Tian Tsinghua University Xin Zhao Tsinghua University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42005

[ Download ] [ 2019-04-27 22:39:44 uploaded by zhaox15 ] [ 732 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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