We introduce filtered cohomologies of differential forms on symplectic manifolds. They generalize and include the cohomologies discussed in Papers I and II as a subset. The filtered cohomologies are finite-dimensional and can be associated with differential elliptic complexes. Algebraically, we show that the filtered cohomologies give a two-sided resolution of Lefschetz maps, and thereby, they are directly related to the kernels and cokernels of the Lefschetz maps. We also introduce a novel, non-associative product operation on differential forms for symplectic manifolds. This product generates an A-infinity algebra structure on forms that underlies the filtered cohomologies and gives them a ring structure. As an application, we demonstrate how the ring structure of the filtered cohomologies can distinguish different symplectic four-manifolds in the context of a circle times a fibered three-manifold.

A popular and classical method for finding the best rank one approximation of a real tensor is the higher order power method (HOPM). It is known in the literature that the iterative sequence generated by HOPM converges globally, while the convergence rate can be superlinear, linear or sublinear. In this paper, we examine the convergence rate of HOPM in solving the best rank one approximation problem of real tensors. We first show that the iterative sequence of HOPM always converges globally and provide an explicit eventual sublinear convergence rate. The sublinear convergence rate estimate is in terms of the dimension and the order of the underlying tensor space. Then, we examine the concept of nondegenerate singular vector tuples and show that, if the sequence of HOPM converges to a nondegenerate singular vector tuple, then the global convergence rate is R-linear. We show that, for almost all tensors (in the sense of Lebesgue measure), all the singular vector tuples are nondegenerate, and so, the HOPM “typically” exhibits global R-linear convergence rate. Moreover, without any regularity assumption, we establish that the sequence generated by HOPM always converges globally and R-linearly for orthogonally decomposable tensors with order at least 3. We achieved this by showing that each nonzero singular vector tuple of an orthogonally decomposable tensor with order at least 3 is nondegenerate.

The free-living SAR11 clade is a globally abundant group of oceanic Alphaproteobacteria, with small genome sizes and rich genomic A+T content. However, the taxonomy of SAR11 has become controversial recently. Some researchers argue that the position of SAR11 is a sister group to Rickettsiales. Other researchers advocate that SAR11 is located within free-living lineages of Alphaproteobacteria. Here, we use the natural vector representation method to identify the evolutionary origin of the SAR11 clade. This alignment-free method does not depend on any model assumptions. With this approach, the correspondence between proteome sequences and their natural vectors is one-to-one. After fixing a set of proteins, each bacterium is represented by a set of vectors. The Hausdorff distance is then used to compute the dissimilarity distance between two bacteria. The phylogenetic tree can be reconstructed based on these distances. Using our method, we systematically analyze four data sets of alphaproteobacterial proteomes in order to reconstruct the phylogeny of Alphaproteobacteria. From this we can see that the phylogenetic position of the SAR11 group is within a group of other free-living lineages of Alphaproteobacteria.

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