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The free-living SAR11 clade is a globally abundant group of oceanic Alphaproteobacteria, with small genome sizes and rich genomic A+T content. However, the taxonomy of SAR11 has become controversial recently. Some researchers argue that the position of SAR11 is a sister group to Rickettsiales. Other researchers advocate that SAR11 is located within free-living lineages of Alphaproteobacteria. Here, we use the natural vector representation method to identify the evolutionary origin of the SAR11 clade. This alignment-free method does not depend on any model assumptions. With this approach, the correspondence between proteome sequences and their natural vectors is one-to-one. After fixing a set of proteins, each bacterium is represented by a set of vectors. The Hausdorff distance is then used to compute the dissimilarity distance between two bacteria. The phylogenetic tree can be reconstructed based on these distances. Using our method, we systematically analyze four data sets of alphaproteobacterial proteomes in order to reconstruct the phylogeny of Alphaproteobacteria. From this we can see that the phylogenetic position of the SAR11 group is within a group of other free-living lineages of Alphaproteobacteria.

The moment-entropy inequality shows that a contin- uous random variable with given second moment and maximal Shannon entropy must be Gaussian. Stam’s inequality shows that a continuous random variable with given Fisher information and minimal Shannon entropy must also be Gaussian. The Crame ́r- Rao inequality is a direct consequence of these two inequalities. In this paper the inequalities above are extended to Renyi entropy, p-th moment, and generalized Fisher information. Gen- eralized Gaussian random densities are introduced and shown to be the extremal densities for the new inequalities. An extension of the Crame ́r–Rao inequality is derived as a consequence of these moment and Fisher information inequalities.

Let $X$ be an abstract not necessarily compact orientable CR manifold of dimension $2n-1$, $n\geqslant2$, and let $L^k$ be the $k$-th tensor power of a CR complex line bundle $L$ over $X$. Given $q\in\set{0,1,\ldots,n-1}$, let $\Box^{(q)}_{b,k}$ be the Gaffney extension of Kohn Laplacian for $(0,q)$ forms with values in $L^k$. For $\lambda\geq0$, let $\Pi^{(q)}_{k,\leq\lambda}:=E((-\infty,\lambda])$, where $E$ denotes the spectral measure of $\Box^{(q)}_{b,k}$. In this work, we prove that $\Pi^{(q)}_{k,\leq k^{-N_0}}F^*_k$, $F_k\Pi^{(q)}_{k,\leq k^{-N_0}}F^*_k$, $N_0\geq1$, admit asymptotic expansions with respect to $k$ on the non-degenerate part of the characteristic manifold of $\Box^{(q)}_{b,k}$, where $F_k$ is some kind of microlocal cut-off function. Moreover, we show that $F_k\Pi^{(q)}_{k,\leq0}F^*_k$ admits a full asymptotic expansion with respect to $k$ if $\Box^{(q)}_{b,k}$ has small spectral gap property with respect to $F_k$ and $\Pi^{(q)}_{k,\leq0}$ is $k$-negligible away the diagonal with respect to $F_k$. By using these asymptotics, we establish almost Kodaira embedding theorems on CR manifolds and Kodaira embedding theorems on CR manifolds with transversal CR $S^1$ action.

Define a “Liouville domain” to be a compact exact symplectic manifold with contact-type boundary. We use embedded contact homology to assign to each four-dimensional Liouville domain (or subset thereof) a sequence of real numbers, which we call “ECH capacities”. The ECH capacities of a Liouville domain are defined in terms of the “ECH spectrum” of its boundary, which measures the amount of symplectic action needed to represent certain classes in embedded contact homology. Using cobordism maps on embedded contact homology (defined in joint work with Taubes), we show that the ECH capacities are monotone with respect to symplectic embeddings. We compute the ECH capacities of ellipsoids, polydisks, certain subsets of the cotangent bundle of T 2, and disjoint unions of examples for which the ECH capacities are known. The resulting symplectic embedding obstructions are sharp in some interesting cases, for example for the problem of embedding an ellipsoid into a ball (as shown by McDuff-Schlenk) or embedding a disjoint union of balls into a ball. We also state and present evidence for a conjecture under which the asymptotics of the ECH capacities of a Liouville domain recover its symplectic volume.