Persistent homology is constrained to purely topological persistence, while multiscale graphs account only for geometric information. This work introduces persistent spectral theory to create a unified low-dimensional multiscale paradigm for revealing topological persistence and extracting geometric shapes from high-dimensional datasets. For a point-cloud dataset, a filtration procedure is used to generate a sequence of chain complexes and associated families of simplicial complexes and chains, from which we construct persistent combinatorial Laplacian matrices. We show that a full set of topological persistence can be completely recovered from the harmonic persistent spectra, that is, the spectra that have zero eigenvalues, of the persistent combinatorial Laplacian matrices. However, non-harmonic spectra of the Laplacian matrices induced by the filtration offer another powerful tool for data analysis, modeling, and prediction. In this work, fullerene stability is predicted by using both harmonic spectra and non-harmonic persistent spectra, while the latter spectra are successfully devised to analyze the structure of fullerenes and model protein flexibility, which cannot be straightforwardly extracted from the current persistent homology. The proposed method is found to provide excellent predictions of the protein B-factors for which current popular biophysical models break down.

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In this paper, we propose and analyze a mixed $H^1$-conforming finite element method for solving Maxwell's equations in terms of electric field and Lagrange multiplier, where the multiplier is introduced accounting for the divergence constraint. We mainly focus on the case that the physical domain is non-convex and its boundary includes reentrant corners or edges, which may lead the solution of Maxwell's equations to be a non-$H^1$ very weak function and thus causes many numerical difficulties. The proposed method is formulated in the stabilized form by adding an additional mesh-dependent stabilization term to the mixed variational formulation. A general framework of stability and error analysis is established. Specifically, a pair of $H^1$-conforming finite elements, namely the $CP_2$-$P_1$ elements, for electric field and multiplier is studied and its stability and error bounds are also derived. Numerical experiments for source problems as well as eigenvalue problems on the $L$-shaped and cracked domains are presented to illustrate the high performance of the proposed mixed $H^1$-conforming finite element method.

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