We study the uniqueness of minimal submanifolds and the stability of the mean curvature flow in several well-known model spaces of manifolds of special holonomy. These include the Stenzel metric on the cotangent bundle of spheres, the Calabi metric on the cotangent bundle of complex projective spaces, and the Bryant--Salamon metrics on vector bundles over certain Einstein manifolds. In particular, we show that the zero sections, as calibrated submanifolds with respect to their respective ambient metrics, are unique among compact minimal submanifolds and are dynamically stable under the mean curvature flow. The proof relies on intricate interconnections of the Ricci flatness of the ambient space and the extrinsic geometry of the calibrated submanifolds.

We establish a boundary maximum principle for free boundary minimal submanifolds in a Riemannian manifold with boundary, in any dimension and codimension. Our result holds more generally in the context of varifolds.

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Two Dehn surgeries on a knot are called purely cosmetic, if they yield manifolds that are homeomorphic as oriented manifolds. Suppose there exist purely cosmetic surgeries on a knot in S^3, we show that the two surgery slopes must be the opposite of each other. One ingredient of our proof is a Dehn surgery formula for correction terms in Heegaard Floer homology.

For any smooth Riemannian metric on an (n+1)-dimensional compact manifold with boundary (M,∂M) where 3≤(n+1)≤7, we establish general upper bounds for the Morse index of free boundary minimal hypersurfaces produced by min-max theory in the Almgren-Pitts setting. We apply our Morse index estimates to prove that for almost every (in the C-infinity Baire sense) Riemannan metric, the union of all compact, properly embedded free boundary minimal hypersurfaces is dense in M. If ∂M is further assumed to have a strictly mean convex point, we show the existence of infinitely many compact, properly embedded free boundary minimal hypersurfaces whose boundaries are non-empty. Our results prove a conjecture of Yau for generic metrics in the free boundary setting.