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The Onsager's reciprocal relation plays a fundamental role in the nonequilibrium thermodynamics. However, unfortunately, its classical version is valid only within a narrow region near equilibrium due to the linear regression hypothesis, which largely restricts its usage. In this paper, based on the conservation-dissipation formalism, a generalized version of Onsager's relations for the master equations and Fokker-Planck equations was derived. Nonlinear constitutive relations with nonsymmetric and positively stable operators, which become symmetric under the detailed balance condition, constitute key features of this new generalization. Similar conclusions also hold for many other classical models in physics and chemistry, which in turn make the current study as a benchmark for the application of generalized Onsager's relations in nonequilibrium thermodynamics.

In this paper, we discuss high order finite difference weighted essentially non-oscillatory (WENO) schemes, coupled with total variation diminishing (TVD) Runge-Kutta (RK) temporal integration, for solving the semilinear hyperbolic system of a correlated random walk model describing movement of animals and cells in biology. Since the solutions to this system are non-negative, we discuss a positivity-preserving limiter without compromising accuracy. Analysis is performed to justify the maintanance of third order spatial / temporal accuracy when the limiters are applied to a third order finite difference scheme and third order TVD-RK time discretization for solving this model. Numerical results are also provided to demonstrate these methods up to fifth order accuracy.

The convergence to steady state solutions of the Euler equations for weighted compact nonlinear schemes (WCNS) [Deng X. and Zhang H. (2000), J. Comput. Phys. 165, 22-44 and Zhang S., Jiang S and Shu C.-W. (2008), J. Comput. Phys. 227, 7294-7321] is studied through numerical tests. Like most other shock capturing schemes, WCNS also suffers from the problem that the residue can not settle down to machine zero for the computation of the steady state solution which contains shock waves but hangs at the truncation error level. In this paper, the techniques studied in [Zhang S. and Shu. C.-W. (2007), J. Sci. Comput. 31, 273-305 and Zhang S., Jiang S and Shu. C.-W. (2011), J. Sci. Comput. 47, 216-238], to improve the convergence to steady state solutions for WENO schemes, are generalized to the WCNS. Detailed numerical studies in one and two dimensional cases are performed. Numerical tests demonstrate the effectiveness of these techniques when applied to WCNS. The residue of various order WCNS can settle down to machine zero for typical cases while the small post-shock oscillations can be removed.