Shape registration has a wide range of applications in geometric modeling, medical imaging, and computer vision. This paper focuses on the registration of the genus-3 vestibular systems and studies the geometric differences between the normal and Adolescent Idiopathic Scoliosis (AIS) groups. The non-trivial topology of the VS poses great technical challenges to the geometric analysis. To tackle these challenges, we present an effective and practical solution to register the vestibular systems. We first extract six geodesic landmarks for the VS, which are stable, intrinsic, and insensitive to the VS’s resolution and tessellation. Moreover, they are highly consistent regardless of the AIS and normal groups. The detected geodesic landmarks partition the VS into three patches, a topological annulus and two topological disks. For each pair of patches of the AIS subject and the control, we compute a bijective map using the holomorphic 1-form and harmonic map techniques. With a carefully designed boundary condition, the three individual maps can be glued in a seamless manner so that the resulting registration is a homeomorphism with exact landmark matching. Our method is robust, automatic and efficient. It takes only a few seconds on a low-end PC, which significantly outperforms the non-rigid ICP algorithm. We conducted a student’s t-test on the test data. Computational results show that using the mean curvature measure E_H, our method can distinguish the AIS subjects and the normal subjects.

Registration, which aims to find an optimal 1-1 correspondence between shapes, is an important process in different research areas. Landmark-based surface registration has been widely studied to obtain a mapping between shapes that matches important features. Obtaining a unique and bijective surface registration that matches features consistently is generally challenging, especially when a large number of landmark constraints are enforced. This motivates us to search for a unique landmark matching surface diffeomorphism, which minimizes the local geometric distortion. For this purpose, we propose a special class of diffeomorphisms called the Teichmüller mappings (T-Maps). Under suitable conditions on the landmark constraints, a unique T-Map between two surfaces can be obtained, which minimizes the maximal conformality distortion. The conformality distortion measures how far the mapping deviates from a conformal mapping, and hence it measures the local geometric distortion. In this paper, we propose an efficient iterative algorithm, called the quasi-conformal (QC) iteration, to compute the T-Map. The basic idea is to represent the set of diffeomorphisms using Beltrami coefficients (BCs) and look for an optimal BC associated to the desired T-Map. The associated diffeomorphism can be efficiently reconstructed from the optimal BC using the linear Beltrami solver (LBS). Using BCs to represent diffeomorphisms guarantees the diffeomorphic property of the registration, even with very large deformation. Using our proposed method, the T-Map can be accurately and efficiently computed. The obtained registration is guaranteed to be bijective. The proposed algorithm can also be extended to compute T-Map with soft landmark constraints. We applied the proposed algorithm to real applications, such as brain landmark matching registration, constrained texture mapping, and human face registration. Experimental results shows that our method is both effective and efficient in computing a nonoverlap landmark matching registration with the least amount of conformality distortion.

In this paper, we propose novel algorithms for inpainting and refinement of diffeomorphisms. We first represent a diffeomorphism by its Beltrami coefficient. Then it is possible to refine and inpaint the diffeomorphism by processing this Beltrami coefficient. With the inpainted/refined Beltrami coefficient, we construct a new diffeomorphism using the exact Beltrami holomorphic flow algorithm proposed in this paper. We apply our algorithms on several practical applications, which include the inpainting of a highly distorted diffeomorphism, the inpainting of image sequences of deforming shapes, the super-resolution of diffeomorphisms and the global parameterization of cortical surfaces by combining local parameterizations. Experiments show that our algorithm can solve these problems with natural and smooth results. We demonstrate how our proposed method can be widely applied in areas from texture mapping to video processing, and from computer graphics to medical imaging.

Alzheimer's disease (AD) is a no-cure disease that has been frustrating the scientists for many years. Analyzing the disease has become an important but challenging research topic. The shape analysis of the sub-cortical structure of AD patients has been commonly used to understand this disease. In this paper, we assess the feasibility of using shape information on the hippocampal (HP) surfaces to detect some sub-structural changes in AD patients. We propose a quasi-conformal statistical shape analysis model, which allows us to study local regional geometric changes in the HPs amongst normal control (NC) and AD groups. A shape index defined by the quasi-conformality and surface curvatures is used to characterize region-specific shape variations of the HP surfaces. Feature vectors can be extracted for each HPs, with which a classification model can be built using machine learning methods to classify HPs into NC and AD subjects. Experiments have been carried out on 99 normal controls and 41 patients with AD. Results demonstrate that the proposed quasi-conformal based model is effective for classifying HPs into NC and AD groups with high classification accuracy (with highest overall classification accuracy reaching 87.86% in a leave-one-out experiment using the whole dataset).

We address the problem of surface inpainting, which aims to fill in holes or missing regions on a Riemann surface based on its surface geometry. In practical situation, surfaces obtained from range scanners often have holes where the 3D models are incomplete. In order to analyze the 3D shapes effectively, restoring the incomplete shape by filling in the surface holes is necessary. In this paper, we propose a novel conformal approach to inpaint surface holes on a Riemann surface based on its surface geometry. The basic idea is to represent the Riemann surface using its conformal factor and mean curvature. According to Riemann surface theory, a Riemann surface can be uniquely determined by its conformal factor and mean curvature up to a rigid motion. Given a Riemann surface S, its mean curvature H and conformal factor λ can be computed easily through its conformal parameterization. Conversely, given λ and H, a Riemann surface can be uniquely reconstructed by solving the Gauss-Codazzi equation on the conformal parameter domain. Hence, the conformal factor and the mean curvature are two geometric quantities fully describing the surface. With this λ-H representation of the surface, the problem of surface inpainting can be reduced to the problem of image inpainting of λ and H on the conformal parameter domain. Once λ and H are inpainted, a Riemann surface can be reconstructed which effectively restores the 3D surface with missing holes. Since the inpainting model is based on the geometric quantities λ and H, the restored surface follows the surface geometric pattern. We test the proposed algorithm on synthetic data as well as real surface data. Experimental results show that our proposed method is an effective surface inpainting algorithm to fill in surface holes on an incomplete 3D models based their surface geometry.

A fresh framework for mesh optimization, the Filtered Hooke's Optimization, is proposed. With the notion of the elasticity theory, the Hooke's Optimization is developed by modifying the Hooke's law, in which an elastic force is simulated on the edges of a mesh so that adjacent vertices are either attracted to each other or repelled from each other, so as to regularize the mesh in terms of triangulation. A normal torque force is acted on vertices to guarantee smoothness of the surface. In addition, a filtering scheme, called the Newtonian Filtering, is proposed as a supplementary tool for the proposed Hooke's Optimization to preserve the geometry of the mesh. Numerical simulations on meshes with different geometry indicate an impressive performance of our proposed framework to significantly improve the mesh triangulation without noteworthy distortions of the mesh geometry.

Surface parameterizations have been widely applied to digital geometry processing. In this paper, we propose an efficient conformal energy minimization (CEM) algorithm for computing conformal parameterizations of simply-connected open surfaces with a very small angular distortion and a highly improved computational efficiency. In addition, we generalize the proposed CEM algorithm to computing conformal parameterizations of multiply-connected surfaces. Furthermore, we prove the existence of a nontrivial accumulation point of the proposed CEM algorithm under some mild conditions. Several numerical results show the efficiency and robustness of the CEM algorithm comparing to the existing state-of-the-art algorithms. An application of the CEM on the surface morphing between simply-connected open surfaces is demonstrated thereafter. Thanks to the CEM algorithm, the whole computations for the surface morphing can be performed efficiently and robustly.

This work proposes a novel framework for optimization in the constrained diffeomorphism space for deformable surface registration. First the diffeomorphism space is modeled as a special complex functional space on the source surface, the Beltrami coefficient space. The physically plausible constraints, in terms of feature landmarks and deformation types, define subspaces in the Beltrami coefficient space. Then the harmonic energy of the registration is minimized in the constrained subspaces. The minimization is achieved by alternating two steps: 1) optimization - diffuse the Beltrami coefficient, and 2) projection - first deform the conformal structure by the current Beltrami coefficient and then compose with a harmonic map from the deformed conformal structure to the target. The registration result is diffeomorphic, satisfies the physical landmark and deformation constraints, and minimizes the conformality distortion. Experiments on human facial surfaces demonstrate the efficiency and efficacy of the proposed registration framework.

A natural metric in 2-manifold surfaces is to use geodesic distance. If a 2-manifold surface is represented by a triangle mesh T , the geodesic metric on T can be computed exactly using computational geometry methods. Previous work for establishing the geodesic metric on T only supports using half-edge data structures; i.e., each edge e in T is split into two halves (he1, he2) and each half-edge corresponds to one of two faces incident to e. In this paper, we prove that the exact-geodesic structures on two halfedges of e can be merged into one structure associated with e. Four merits are achieved based on the properties which are studied in this paper: (1) Existing CAD systems that use edge-based data structures can directly add the geodesic distance function without changing the kernel to a half-edge data structure; (2) To find the geodesic path from inquiry points to the source, the MMP algorithm can be run in an onthe- fly fashion such that the inquiry points are covered by correct wedges; (3) The MMP algorithm is sped up by pruning unnecessary wedges during the wedge propagation process; (4) The storage of the MMP algorithm is reduced since fewer wedges need to be stored in an edge-based data structure. Experimental results show that when compared to the classic half-edge data structure, the edge-based implementation of the MMP algorithm reduces running time by 44% and storage by 29% on average.

Parameterizations of manifolds are widely applied to the fields of numerical partial differential equations and computer graphics. To this end, in recent years several efficient and reliable numerical algorithms have been developed by different research groups for the computation of triangular and tetrahedral mesh parameterizations. However, it is still challenging when the topology of manifolds is nontrivial, e.g., the 3-manifold of a topological solid torus. In this paper, we propose a novel volumetric stretch energy minimization algorithm for volume-preserving parameterizations of toroidal polyhedra with a single boundary being mapped to a standard torus. In addition, the algorithm can also be used to compute the equiareal mapping between a genus-one closed surface and the standard torus. Numerical experiments indicate that the developed algorithm is effective and performs well on the bijectivity of the mapping. Applications on manifold registrations and partitions are demonstrated to show the robustness of our algorithms.