Surface registration is widely used in machine vision and medical imaging, where 1-1 correspondences between surfaces are computed to study their variations. Surface maps are usually stored as the 3D coordinates each vertex is mapped to, which often requires lots of storage memory. This causes inconvenience in data transmission and data storage, especially when a large set of surfaces are analyzed. To tackle this problem, we propose a novel representation of surface diffeomorphisms using Beltrami coefficients, which are complex-valued functions defined on surfaces with supreme norm less than 1. Fixing any 3 points on a pair of surfaces, there is a 1-1 correspondence between the set of surface diffeomorphisms between them and the set of Beltrami coefficients on the source domain. Hence, every bijective surface map can be represented by a unique Beltrami coefficient. Conversely, given a Beltrami coefficient, we can reconstruct the unique surface map associated to it using the Beltrami Holomorphic flow (BHF) method introduced in this paper. Using this representation, 1/3 of the storage space is saved. We can further reduce the storage requirement by 90% by compressing the Beltrami coefficients using Fourier approximations. We test our algorithm on synthetic data, real human brain and hippocampal surfaces. Our results show high accuracy in the reconstructed data, while the amount of storage is greatly reduced. Our approach is compared with the Fourier compression of the coordinate functions using the same amount of data. The latter approach often shows jaggy results and cannot guarantee to preserve diffeomorphisms.

Surface conformal maps between genus-0 surfaces play important roles in applied mathematics and engineering, with applications in medical image analysis and computer graphics. Previous work (Gu and Yau in Commun Inf Syst 2(2):121–146, 2002) introduces a variational approach, where global conformal parameterization of genus-0 surfaces was addressed through minimizing the harmonic energy, with two weaknesses: its gradient descent iteration is slow, and its solutions contain undesired parameterization foldings when the underlying surface has long sharp features. In this paper, we propose an algorithm that significantly accelerates the harmonic energy minimization and a method that iteratively removes foldings by taking advantages of the weighted Laplace–Beltrami eigen-projection. Experimental results show that the proposed approaches compute genus-0 surface harmonic maps much faster than the existing algorithm in Gu and Yau (Commun Inf Syst 2(2):121–146, 2002) and the new results contain no foldings.

Surface registration between cortical surfaces is crucial in medical imaging for performing systematic comparisons between brains. Landmark-matching registration that matches anatomical features, called the sulcal landmarks, is often required to obtain a meaningful 1-1 correspondence between brain surfaces. This is commonly done by parameterizing the surface onto a simple parameter domain, such as the unit sphere, in which the sulcal landmarks are consistently aligned. Landmark matching surface registration can then be obtained from the landmark aligned parameterizations. For genus-0 closed brain surfaces, the optimized spherical harmonic parameterization, which aligns landmarks to consistent locations on the sphere, has been widely used. This approach is limited by the loss of bijectivity under large deformations and the slow computation. In this paper, we propose FLASH, a fast algorithm to compute the optimized spherical harmonic parameterization with consistent landmark alignment. This is achieved by formulating the optimization problem to ℂ and thereby linearizing the problem. Errors introduced near the pole are corrected using quasiconformal theories. Also, by adjusting the Beltrami differential of the mapping, a diffeomorphic (1-1, onto) spherical parameterization can be effectively obtained. The proposed algorithm has been tested on 38 human brain surfaces. Experimental results demonstrate that the computation of the landmark aligned spherical harmonic parameterization is significantly accelerated using the proposed algorithm.

The analysis of the vestibular system (VS) is an important research topic in medical image analysis. VS is a sensory structure in the inner ear for the perception of spatial orientation. It is believed several diseases, such as the Adolescent Idiopathic Scoliosis (AIS), are due to the impairment of the VS function. The morphology of the VS is thus of great research significance. A major challenge is that the VS is a genus-3 surface. The high-genus topology of the VS poses great challenges to find accurate pointwise correspondences between the surfaces and whereby perform accurate shape analysis. In this paper, we present a method to obtain the landmark constrained diffeomorphic registration between the VS surfaces based on the quasi-conformal theory. Given a set of corresponding landmarks on the VS surfaces, a diffeomorphism between the VS surfaces that matches the features consistently can be obtained. The basic idea is to iteratively search for an admissible Beltrami coefficient, which is associated to our desired landmark matching registration. With the obtained surface registrations, vertex-wise morphometric analysis can be carried out. Two types of geometric features are used for shape comparison. One is the collection of homotopic loops on each canals of the VS, which can be used to measure the local thickness of the canals. From the homotopic loops, centerlines can be extracted. By examining the deviations of the centerlines from the best fit planes, bendings of the canals can be detected. The second geometric feature is the minimal surface enclosed by the homotopic loop. From the minimal surfaces of each homotopic loops, cross-sectional area of the canals can be evaluated. To study the local shape difference more comprehensively, a complete shape index, which is defined using the Beltrami coefficients and surface curvatures, is used. We test proposed registration method on 15 VS of normal control subjects and 12 VS of patients suffering from AIS. Experimental results show the efficacy and accuracy of the proposed algorithm to compute the VS surface registration. Shape analysis has also been carried out using the proposed geometric features and shape index, which reveals shape differences in the posterior canal between normal and diseased AIS groups.

This paper presents a novel algorithm to obtain landmark-based genus-1 surface registration via a special class of quasi-conformal maps called the Teichmüller maps. Registering shapes with important features is an important process in medical imaging. However, it is challenging to obtain a unique and bijective genus-1 surface matching that satisfies the prescribed landmark constraints. In addition, as suggested by [11], conformal transformation provides the most natural way to describe the deformation or growth of anatomical structures. This motivates us to look for the unique mapping between genus-1 surfaces that matches the features while minimizing the maximal conformality distortion. Existence and uniqueness of such optimal diffeomorphism is theoretically guaranteed and is called the Teichmüller extremal mapping. In this work, we propose an iterative algorithm, called the Quasi-conformal (QC) iteration, to find the Teichmüller extremal mapping between the covering spaces of genus-1 surfaces. By representing the set of diffeomorphisms using Beltrami coefficients (BCs), we look for an optimal BC which corresponds to our desired diffeomorphism that matches prescribed features and satisfies the periodic boundary condition on the covering space. Numerical experiments show that our proposed algorithm is efficient and stable for registering genus-1 surfaces even with large amount of landmarks. We have also applied the algorithm on registering vertebral bones with prescribed feature curves, which demonstrates the usefulness of the proposed algorithm.

A natural metric in 2-manifold surfaces is to use geodesic distance. If a 2-manifold surface is represented by a triangle mesh T , the geodesic metric on T can be computed exactly using computational geometry methods. Previous work for establishing the geodesic metric on T only supports using half-edge data structures; i.e., each edge e in T is split into two halves (he1, he2) and each half-edge corresponds to one of two faces incident to e. In this paper, we prove that the exact-geodesic structures on two halfedges of e can be merged into one structure associated with e. Four merits are achieved based on the properties which are studied in this paper: (1) Existing CAD systems that use edge-based data structures can directly add the geodesic distance function without changing the kernel to a half-edge data structure; (2) To find the geodesic path from inquiry points to the source, the MMP algorithm can be run in an onthe- fly fashion such that the inquiry points are covered by correct wedges; (3) The MMP algorithm is sped up by pruning unnecessary wedges during the wedge propagation process; (4) The storage of the MMP algorithm is reduced since fewer wedges need to be stored in an edge-based data structure. Experimental results show that when compared to the classic half-edge data structure, the edge-based implementation of the MMP algorithm reduces running time by 44% and storage by 29% on average.

Let $K/k$ be a finite Galois extension and $\pi = \fn{Gal}(K/k)$. An algebraic torus $T$ defined over $k$ is called a $\pi$-torus if $T\times_{\fn{Spec}(k)} \fn{Spec}(K)\simeq \bm{G}_{m,K}^n$ for some integer $n$. The set of all algebraic $\pi$-tori defined over $k$ under the stably birational equivalence forms a semigroup, denoted by $T(\pi)$. We will give a complete proof of the following theorem due to Endo and Miyata \cite{EM4}. Theorem. Let $\pi$ be a finite group. Then $T(\pi)\simeq C(\Omega_{\bm{Z}\pi})$ where $\Omega_{\bm{Z}\pi}$ is a maximal $\bm{Z}$-order in $\bm{Q}\pi$ containing $\bm{Z}\pi$ and $C(\Omega_{\bm{Z}\pi})$ is the locally free class group of $\Omega_{\bm{Z}\pi}$, provided that $\pi$ is isomorphic to one of the following four types of groups : $C_n$ ($n$ is any positive integer), $D_m$ ($m$ is any odd integer $\ge 3$), $C_{q^f}\times D_m$ ($m$ is any odd integer $\ge 3$, $q$ is an odd prime number not dividing $m$, $f\ge 1$, and $(\bm{Z}/q^f\bm{Z})^{\times}=\langle \bar{p}\rangle$ for any prime divisor $p$ of $m$), $Q_{4m}$ ($m$ is any odd integer $\ge 3$, $p\equiv 3 \pmod{4}$ for any prime divisor $p$ of $m$).

Alzheimer's disease (AD) is a no-cure disease that has been frustrating the scientists for many years. Analyzing the disease has become an important but challenging research topic. The shape analysis of the sub-cortical structure of AD patients has been commonly used to understand this disease. In this paper, we assess the feasibility of using shape information on the hippocampal (HP) surfaces to detect some sub-structural changes in AD patients. We propose a quasi-conformal statistical shape analysis model, which allows us to study local regional geometric changes in the HPs amongst normal control (NC) and AD groups. A shape index defined by the quasi-conformality and surface curvatures is used to characterize region-specific shape variations of the HP surfaces. Feature vectors can be extracted for each HPs, with which a classification model can be built using machine learning methods to classify HPs into NC and AD subjects. Experiments have been carried out on 99 normal controls and 41 patients with AD. Results demonstrate that the proposed quasi-conformal based model is effective for classifying HPs into NC and AD groups with high classification accuracy (with highest overall classification accuracy reaching 87.86% in a leave-one-out experiment using the whole dataset).

We address the problem of detecting deformities on elastic surfaces. This is of great importance for shape analysis, with applications such as detecting abnormalities in biological shapes (e.g., brain structures). We propose an effective algorithm to detect abnormal deformations by generating quasi-conformal maps between the original and deformed surfaces. We firstly flatten the 3D surfaces conformally onto 2D rectangles using the discrete Yamabe flow and use them to compute a quasi-conformal map that matches internal features lying within the surfaces. The deformities on the elastic surface are formulated as non-conformal deformations, whereas normal deformations that preserve local geometry are formulated as conformal deformations. We then detect abnormalities by computing the Beltrami coefficient associated uniquely with the quasi-conformal map. The Beltrami coefficient is a complex-valued function defined on the surface. It describes the deviation of the deformation from conformality at each point. By considering the norm of the Beltrami coefficient, we can effectively segment the regions of abnormal changes, which are invariant under normal (non-rigid) deformations that preserve local geometry. Furthermore, by considering the argument of the Beltrami coefficient, we can capture abnormalities induced by local rotational changes. We tested the algorithm by detecting abnormalities on synthetic surfaces, 3D human face data and MRI-derived brain surfaces. Experimental results show that our algorithm can effectively detect abnormalities and capture local rotational alterations. Our method is also more effective than other existing methods, such as the isometric indicator, for locating abnormalities.

In this work, we introduce two sets of algorithms inspired by the ideas from modern geometry. One is computational conformal geometry method, including harmonic maps, holomorphic 1-forms and Ricci flow. The other one is optimization method using affine normals.

Parameterizations of manifolds are widely applied to the fields of numerical partial differential equations and computer graphics. To this end, in recent years several efficient and reliable numerical algorithms have been developed by different research groups for the computation of triangular and tetrahedral mesh parameterizations. However, it is still challenging when the topology of manifolds is nontrivial, e.g., the 3-manifold of a topological solid torus. In this paper, we propose a novel volumetric stretch energy minimization algorithm for volume-preserving parameterizations of toroidal polyhedra with a single boundary being mapped to a standard torus. In addition, the algorithm can also be used to compute the equiareal mapping between a genus-one closed surface and the standard torus. Numerical experiments indicate that the developed algorithm is effective and performs well on the bijectivity of the mapping. Applications on manifold registrations and partitions are demonstrated to show the robustness of our algorithms.

This paper studies the Voronoi diagrams on 2-manifold meshes based on geodesic metric (a.k.a. geodesic Voronoi diagrams or GVDs), which have polyline generators. We show that our general setting leads to situations more complicated than conventional 2D Euclidean Voronoi diagrams as well as point-source based GVDs, since a typical bisector contains line segments, hyperbolic segments and parabolic segments. To tackle this challenge, we introduce a new concept, called local Voronoi diagram (LVD), which is a combination of additively weighted Voronoi diagram and line-segment Voronoi diagram on a mesh triangle. We show that when restricting on a single mesh triangle, the GVD is a subset of the LVD and only two types of mesh triangles can contain GVD edges. Based on these results, we propose an efficient algorithm for constructing the GVD with polyline generators. Our algorithm runs in O(nNlogN) time and takes O(nN) space on an n-face mesh with m generators, where N = max{m,n}. Computational results on real-world models demonstrate the efficiency of our algorithm.

We propose a novel framework for reconstructing lightweight polygonal surfaces from point clouds. Unlike traditional methods that focus on either extracting good geometric primitives or obtaining proper arrangements of primitives, the emphasis of this work lies in intersecting the primitives (planes only) and seeking for an appropriate combination of them to obtain a manifold polygonal surface model without boundary. We show that reconstruction from point clouds can be cast as a binary labeling problem. Our method is based on a hypothesizing and selection strategy. We first generate a reasonably large set of face candidates by intersecting the extracted planar primitives. Then an optimal subset of the candidate faces is selected through optimization. Our optimization is based on a binary linear programming formulation under hard constraints that enforce the final polygonal surface model to be manifold and watertight. Experiments on point clouds from various sources demonstrate that our method can generate lightweight polygonal surface models of arbitrary piecewise planar objects. Besides, our method is capable of recovering sharp features and is robust to noise, outliers, and missing data.

In this paper, we propose novel algorithms for inpainting and refinement of diffeomorphisms. We first represent a diffeomorphism by its Beltrami coefficient. Then it is possible to refine and inpaint the diffeomorphism by processing this Beltrami coefficient. With the inpainted/refined Beltrami coefficient, we construct a new diffeomorphism using the exact Beltrami holomorphic flow algorithm proposed in this paper. We apply our algorithms on several practical applications, which include the inpainting of a highly distorted diffeomorphism, the inpainting of image sequences of deforming shapes, the super-resolution of diffeomorphisms and the global parameterization of cortical surfaces by combining local parameterizations. Experiments show that our algorithm can solve these problems with natural and smooth results. We demonstrate how our proposed method can be widely applied in areas from texture mapping to video processing, and from computer graphics to medical imaging.

Finding surface mappings with least distortion arises from many applications in various fields. Extremal Teichmüller maps are surface mappings with least conformality distortion. The existence and uniqueness of the extremal Teichmüller map between Riemann surfaces of finite type are theoretically guaranteed (see Fletcher and Markovic, Quasiconformal maps and Teichmüller theory, Oxford Graduate Texts in Math., vol. 11, Oxford University Press, Oxford, 2007). Recently, a simple iterative algorithm for computing the Teichmüller maps between connected Riemann surfaces with given boundary value was proposed by Lui, Lam, Yau, and Gu in Teichmüller extremal mapping and its applications to landmark matching registration, arXiv:1211.2569. Numerical results were reported in the paper to show the effectiveness of the algorithm. The method was successfully applied to landmarkmatching registration. The purpose of this paper is to prove the iterative algorithm proposed in loc. cit., indeed converges.

Shape registration has a wide range of applications in geometric modeling, medical imaging, and computer vision. This paper focuses on the registration of the genus-3 vestibular systems and studies the geometric differences between the normal and Adolescent Idiopathic Scoliosis (AIS) groups. The non-trivial topology of the VS poses great technical challenges to the geometric analysis. To tackle these challenges, we present an effective and practical solution to register the vestibular systems. We first extract six geodesic landmarks for the VS, which are stable, intrinsic, and insensitive to the VS’s resolution and tessellation. Moreover, they are highly consistent regardless of the AIS and normal groups. The detected geodesic landmarks partition the VS into three patches, a topological annulus and two topological disks. For each pair of patches of the AIS subject and the control, we compute a bijective map using the holomorphic 1-form and harmonic map techniques. With a carefully designed boundary condition, the three individual maps can be glued in a seamless manner so that the resulting registration is a homeomorphism with exact landmark matching. Our method is robust, automatic and efficient. It takes only a few seconds on a low-end PC, which significantly outperforms the non-rigid ICP algorithm. We conducted a student’s t-test on the test data. Computational results show that using the mean curvature measure E_H, our method can distinguish the AIS subjects and the normal subjects.

Detecting deformities on objects is a typical topic in shape analysis, and has much applications such as abnormalities detection in medical imaging (e.g. growth of tumor, spread of cancer). While many algorithms are already well-established in a 2-dimensional case when the object is indeed a surface, a model that still performs well in the general n-dimensional case is still missing. It is our goal in this paper to complete this missing piece, by introducing an indicator in order to effectively distinguish between normal and abnormal deformities. The proposed framework is closely related to the classic 2-dimensional conformal geometry and quasi-conformal geometry. In this work, we model abnormal deformations by anisotropic deformations. Given any two objects of the same dimension (with landmark constraints in between), we define the Anisotropic Indicator, a locally defined real-valued function on the original object, which demonstrates the abnormalities in the deformation between them. Both global and local features about the abnormalities between the two objects can be tracked by analyzing the indicator. We tested the algorithm by detecting deformations on synthetic data and real data, and results show that our algorithm can detect deformations of different types and degrees.

Geodesic based Voronoi diagrams play an important role in many applications of computer graphics. Constructing such Voronoi diagrams usually resorts to exact geodesics. However, exact geodesic computation always consumes lots of time and memory, which has become the bottleneck of constructing geodesic based Voronoi diagrams. In this paper, we propose the window-VTP algorithm, which can effectively reduce redundant computation and save memory. As a result, constructing Voronoi diagrams using the proposed window-VTP algorithm runs 3-8 times faster than Liu et al.’s method [LCT11], 1.2 times faster than its FWP-MMP variant and more importantly uses 10-70 times less memory than both of them.

The study of 2D shapes is a central problem in the field of computer vision. In 2D shape analysis, classification and recognition of objects from their observed silhouettes are extremely crucial and yet difficult. It usually involves an efficient representation of 2D shape space with natural metric, so that its mathematical structure can be used for further analysis. Although significant progress has been made for the study of 2D simply-connected shapes, very few works have been done on the study of 2D objects with arbitrary topologies. In this work, we propose a representation of general 2D domains with arbitrary topologies using conformal geometry. A natural metric can be defined on the proposed representation space, which gives a metric to measure dissimilarities between objects. The main idea is to map the exterior and interior of the domain conformally to unit disks and circle domains, using holomorphic 1-forms. A set of diffeomorphisms from the unit circle S^1 to itself can be obtained, which together with the conformal modules are used to define the shape signature. We prove mathematically that our proposed signature uniquely represents shapes with arbitrary topologies. We also introduce a reconstruction algorithm to obtain shapes from their signatures. This completes our framework and allows us to move back and forth between shapes and signatures. Experiments show the efficacy of our proposed algorithm as a stable shape representation scheme.

Automatic computation of surface correspondence via harmonic map is an active research field in computer vision, computer graphics and computational geometry. It may help document and understand physical and biological phenomena and also has broad applications in biometrics, medical imaging and motion capture industries. Although numerous studies have been devoted to harmonic map research, limited progress has been made to compute a diffeomorphic harmonic map on general topology surfaces with landmark constraints. This work conquers this problem by changing the Riemannian metric on the target surface to a hyperbolic metric so that the harmonic mapping is guaranteed to be a diffeomorphism under landmark constraints. The computational algorithms are based on Ricci flow and nonlinear heat diffusion methods. The approach is general and robust. We employ our algorithm to study the

Structured light system using a digital video projector is increasingly used for a 3-D shape measurement because of its digital nature. However, the nonlinear gamma of the projector causes the projected fringe patterns to be non-sinusoidal, which results in phase error therefore shape measurement error. Previous work showed that, by using a small look-up-table (LUT), this type of phase error can be reduced significantly for a three-step phase-shifting algorithm. In this research, we prove that this type of phase error compensation method is not limited to a three-step phase-shifting algorithm. It is generic for any phase-shifting algorithm. The phase error compensation algorithm is able to theoretically eliminate the phase error caused by the gamma of the projector completely. It is based on our finding that in phase domain, the phase error due to the projector's gamma is preserved for arbitrary object's surface

Computing discrete geodesic distance over triangle meshes is one of the fundamental problems in computational geometry and computer graphics. In this problem, an effective window pruning strategy can significantly affect the actual running time. Due to its importance, we conduct an in-depth study of window pruning operations in this paper, and produce an exhaustive list of scenarios where one window can make another window partially or completely redundant. To identify a maximal number of redundant windows using such pairwise cross checking, we propose a set of procedures to synchronize local window propagation within the same triangle by simultaneously propagating a collection of windows from one triangle edge to its two opposite edges. On the basis of such synchronized window propagation, we design a new geodesic computation algorithm based on a triangle-oriented region growing scheme. Our geodesic algorithm can remove most of the redundant windows at the earliest possible stage, thus significantly reducing computational cost and memory usage at later stages. In addition, by adopting triangles instead of windows as the primitive in propagation management, our algorithm significantly cuts down the data management overhead. As a result, it runs 4-15 times faster than MMP and ICH algorithms, 2-4 times faster than FWP-MMP and FWP-CH algorithms, and also incurs the least memory usage.

Computing geodesic distances on triangle meshes is a fundamental problem in computational geometry and computer graphics. To date, two notable classes of algorithms, the Mitchell-Mount-Papadimitriou (MMP) algorithm and the Chen-Han (CH) algorithm, have been proposed. Although these algorithms can compute exact geodesic distances if numerical computation is exact, they are computationally expensive, which diminishes their usefulness for large-scale models and/or time-critical applications. In this paper, we propose the fast wavefront propagation (FWP) framework for improving the performance of both the MMP and CH algorithms. Unlike the original algorithms that propagate only a single window (a data structure locally encodes geodesic information) at each iteration, our method organizes windows with a bucket data structure so that it can process a large number of windows simultaneously without compromising wavefront quality. Thanks to its macro nature, the FWP method is less sensitive to mesh triangulation than the MMP and CH algorithms. We evaluate our FWP-based MMP and CH algorithms on a wide range of large-scale real-world models. Computational results show that our method can improve the speed by a factor of 3-10.

We develop a new algorithm to automatically register hippocampal (HP) surfaces with complete geometric matching, avoiding the need to manually label landmark features. A good registration depends on a reasonable choice of shape energy that measures the dissimilarity between surfaces. In our work, we first propose a complete shape index using the Beltrami coefficient and curvatures, which measures subtle local differences. The proposed shape energy is zero if and only if two shapes are identical up to a rigid motion. We then seek the best surface registration by minimizing the shape energy. We propose a simple representation of surface diffeomorphisms using Beltrami coefficients, which simplifies the optimization process. We then iteratively minimize the shape energy using the proposed Beltrami Holomorphic flow (BHF) method. Experimental results on 212 HP of normal and diseased (Alzheimer's disease) subjects show our proposed algorithm is effective in registering HP surfaces with complete geometric matching. The proposed shape energy can also capture local shape differences between HP for disease analysis.

The skeleton of a 2D shape is an important geometric structure in pattern analysis and computer vision. In this paper we study the skeleton of a 2D shape in a two-manifold M, based on a geodesic metric. We present a formal definition of the skeleton S(\Omega) for a shape V in M and show several properties that make S(\Omega) distinct from its Euclidean counterpart in R^2. We further prove that for a shape sequence {\Omega_i} that converge to a shape V in M, the mapping \Omega\rightarrow S(\Omega_i) is lower semi-continuous. A direct application of this result is that we can use a set P of sample points to approximate the boundary of a 2D shape V in M, and the Voronoi diagram of P inside \Omega\subset M gives a good approximation to the skeleton S(\Omega). Examples of skeleton computation in topography and brain morphometry are illustrated.