Data Analysis, Bio-Statistics, Bio-Mathematics

[1] Continuity Scaling: A Rigorous Framework for Detecting and Quantifying Causality Accurately

Xiong Ying Fudan University Si-Yang Leng Fudan University Huan-Fei Ma Soochow University Qing Nie University of California, Irvine Ying-Cheng Lai Arizona State University Wei Lin Fudan University

Dynamical Systems Data Analysis, Bio-Statistics, Bio-Mathematics Data Analysis mathscidoc:2207.11002

RESEARCH, 2022, 9870149, 2022.5
[ Download ] [ 2022-07-31 15:14:15 uploaded by wlinfudan ] [ 23 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[2] Assessing the Transmissibility of the New SARS-CoV-2 Variants: From Delta to Omicron

Rui Dong Yau Mathematical Sciences Center, Tsinghua University, Beijing, China; Yanqi Lake Beijing Institute of Mathematical Sciences and Applications, Beijing, China Taojun Hu Department of Biostatistics, School of Public Health, Peking University, Beijing 100191, China Yunjun Zhang Department of Biostatistics, School of Public Health, Peking University, Beijing 100191, China Yang Li Chongqing School, University of Chinese Academy of Sciences, Chongqing 400020, China Xiao-Hua Zhou Department of Biostatistics, School of Public Health, Peking University, Beijing 100191, China; Beijing International Center for Mathematical Research, Peking University, Beijing 100191, China

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2204.42002

Vaccines, 10, (4), 496, 2022.3
[ Download ] [ 2022-04-28 14:41:45 uploaded by dongrui ] [ 55 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[3] Full Chromosomal Relationships Between Populations and the Origin of Humans

Rui Dong Yau Mathematical Sciences Center, Tsinghua University, Beijing, China; Yanqi Lake Beijing Institute of Mathematical Sciences and Applications, Beijing, China Shaojun Pei Department of Mathematical Sciences, Tsinghua University, Beijing, China Mengcen Guan Department of Mathematical Sciences, Tsinghua University, Beijing, China Shek-Chung Yau Information Technology Services Center, The Hong Kong University of Science and Technology, Kowloon, Hong Kong, China Changchuan Yin Department of Mathematics, Statistics and Computer Science, University of Illinois at Chicago, Chicago, IL, United States Rong L. He Department of Biological Sciences, Chicago State University, Chicago, IL, United States Stephen S.-T. Yau Department of Mathematical Sciences, Tsinghua University, Beijing, China; Yanqi Lake Beijing Institute of Mathematical Sciences and Applications, Beijing, China

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2204.42001

Frontiers in Genetics, 12, 828805, 2022.2
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[4] Mapping transcriptomic vector fields of single cells

Xiaojie Qiu Whitehead Institute for Biomedical Research, Cambridge, MA, USA Yan Zhang Department of Computational and System Biology, University of Pittsburgh, Pittsburgh, PA, USA Jorge D. Martin-Rufino Broad Institute of MIT and Harvard, Cambridge, MA, USA Chen Weng Whitehead Institute for Biomedical Research, Cambridge, MA, USA Shayan Hosseinzadeh Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA Jianhua Xing Department of Computational and System Biology, University of Pittsburgh, Pittsburgh, PA, USA Jonathan Weissman Whitehead Institute for Biomedical Research, Cambridge, MA, USA

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2202.42001

Cell, 185, 690-711, 2022.2
[ Download ] [ 2022-02-24 06:14:43 uploaded by yaz62 ] [ 201 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[5] AdQSM: A New Method for Estimating Above-Ground Biomass from TLS Point Clouds

Guangpeng Fan Liangliang Nan Yanqi Dong Xiaohui Su Feixiang Chen

Geometric Analysis and Geometric Topology Geometric Modeling and Processing Data Analysis, Bio-Statistics, Bio-Mathematics Data Analysis mathscidoc:2106.15006

Remote Sensing, 12, 3089, 2020.9
[ Download ] [ 2021-06-21 15:33:55 uploaded by liangliangnan ] [ 328 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[6] A New Quantitative Approach to Tree Attributes Estimation Based on LiDAR Point Clouds

Guangpeng Fan Liangliang Nan Feixiang Chen Yanqi Dong Zhiming Wang Hao Li Danyu Chen

Geometric Analysis and Geometric Topology Geometric Modeling and Processing Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2106.15004

Remote Sensing, 12, (11), 1779, 2020.6
[ Download ] [ 2021-06-21 15:23:27 uploaded by liangliangnan ] [ 466 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[7] AdTree: Accurate, Detailed, and Automatic Modelling of Laser-Scanned Trees

Shenglan Du TU Delft Roderik Lindenbergh Hugo Ledoux Jantien Stoter Liangliang Nan

Geometric Analysis and Geometric Topology Geometric Modeling and Processing Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2106.15002

2019.9
[ Download ] [ 2021-06-21 15:17:39 uploaded by liangliangnan ] [ 218 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[8] Frequency domain analysis of fluctuations of mRNA and protein copy numbers within a cell lineage: theory and experimental validation

Chen Jia Beijing Computational Science Research Center Ramon Grima University of Edinburgh

Mathematical Physics Probability Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2105.22001

Physical Review X, 11, 021032, 2021.5
[ Download ] [ 2021-05-12 14:52:34 uploaded by imogold ] [ 247 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[9] Oscillatory Biomedical Signals: Frontiers in Mathematical Models and Statistical Analysis

Hau-Tieng Wu Department of Mathematics, Duke University, Durham Tze Leung Lai Department of Statistics, Stanford University, Stanford Gabriel G. Haddad 3Department of Pediatrics and Rady Children’s Hospital, University of California Alysson Muotri Department of Cellular & Molecular Medicine and Department of Pediatrics

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2105.45001

2021.1
[ Download ] [ 2021-05-04 11:38:02 uploaded by admin ] [ 309 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[10] Determination of effective synaptic conductances using somatic voltage clamp

Songting Li Shanghai JIao Tong University Nan Liu Beijing Normal University Li Yao Beijing Normal University Xiaohui Zhang Beijing Normal University Dongzhuo Zhou Shanghai JIao Tong University David Cai New York University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2104.42005

PLoS Computational Biology, 15, (1006871), 2019.3
[ Download ] [ 2021-04-25 22:29:16 uploaded by DouglasZhou ] [ 165 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[11] Dendritic computations captured by an effective point neuron model

Songting Li Shanghai Jiao Tong University Nan Liu Beijing Normal University Xiaohui Zhang Beijing Normal University David McLaughlin Courant Institute New York University Douglas Zhou Shanghai Jiao Tong University David Cai Courant Institute New York University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2104.42004

Proceedings of the National Academy of Sciences of the United States of America, 116, (30), 15244-15252, 2019.7
[ Download ] [ 2021-04-07 17:27:44 uploaded by songting ] [ 208 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[12] Deterministic and stochastic analysis for different types of regulations in the spontaneous emergence of cell polarity

Yue Liu City University of Hong Kong Wing-Cheong Lo City University of Hong Kong

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2104.42003

Chaos, Solitons and Fractals, 144, 110620, 2021
[ Download ] [ 2021-04-04 14:47:12 uploaded by wingclo ] [ 397 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[13] A modeling study of budding yeast colony formation and its relationship to budding pattern and aging

Wing-Cheong Lo City University of Hong Kong Yanli Wang Ohio State University Ching-Shan Chou Ohio State University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2104.42002

PLoS Computational Biology , 13, (11), e1005843, 2017.4
[ Download ] [ 2021-04-04 14:34:44 uploaded by wingclo ] [ 191 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[14] A hybrid stochastic method with adaptive time step control for reaction–diffusion systems

Wing-Cheong Lo City University of Hong Kong Shaokun Mao City University of Hong Kong

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2104.25001

Journal of Computational Physics, 379, 392–402, 2019
[ Download ] [ 2021-04-04 14:27:06 uploaded by wingclo ] [ 220 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[15] Learning common and specific patterns from data of multiple interrelated biological scenarios with matrix factorization

Lihua Zhang Academy of Mathematics and Systems Science, Chinese Academy of Sciences Shihua Zhang Academy of Mathematics and Systems Science, Chinese Academy of Sciences

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2104.42001

Nucleic Acids Research, 47, (13), 6606–6617, 2019.6
[ Download ] [ 2021-04-02 23:07:34 uploaded by lihuazhangamss ] [ 230 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[16] Persistent spectral graph

Rui Wang Michigan State University Duc Duy Nguyen University of Kentucky Guowei Wei Michigan State University

Combinatorics Data Analysis, Bio-Statistics, Bio-Mathematics Algebraic Topology and General Topology mathscidoc:2103.06001

Int J Numer Meth Biomed Engng, 36, 2020.4
[ Download ] [ 2021-03-04 12:07:08 uploaded by wangru25 ] [ 447 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[17] A two-component Matched Interface and Boundary (MIB) regularization for charge singularity in implicit solvation

Weihua Geng Southern Methodist University, USA Shan Zhao University of Alabama, USA

Numerical Analysis and Scientific Computing Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2005.42001

Distinguished Paper Award in 2020

Journal of Computational Physics, 351, 25-39, 2017
[ Download ] [ 2020-05-29 10:51:58 uploaded by shanzhao ] [ 397 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[18] Variational implicit-solvent predictions of the dry-wet transition pathways for ligand-receptor binding and unbinding kinetics

Shenggao Zhou Soochow University R. G. Weiss ETH Zurich Li-Tien Cheng University of California, San Diego Joachim Dzubiella University of Freiburg J. Andrew McCammon University of California, San Diego Bo Li University of California, San Diego

Numerical Analysis and Scientific Computing Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2005.25001

Proceedings of the National Academy of Sciences of the United States of America, 116, (30), 14989–14994, 2019.7
[ Download ] [ 2020-05-22 17:28:54 uploaded by sgzhou ] [ 340 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[19] Markovian approaches to modeling intracellular reaction processes with molecular memory

Jiajun Zhang Sun Yat-sen University Tianshou Zhou Sun Yat-sen University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2004.42003

Distinguished Paper Award in 2020

PNAS, 116, 23542-23550, 2019.11
[ Download ] [ 2020-04-26 14:59:30 uploaded by zhjiajun ] [ 305 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[20] An enriched network motif family regulates multistep cell fate transitions with restricted reversibility

Yujie Ye Department of Biochemistry and Cellular and Molecular Biology, The University of Tennessee, Knoxville, Tennessee, United States of America Xin Kang Shanghai Center for Mathematical Sciences, Fudan University, Shanghai, China Jordan Bailey Department of Biochemistry and Cellular and Molecular Biology, The University of Tennessee, Knoxville, Tennessee, United States of America Chunhe Li Shanghai Center for Mathematical Sciences, Fudan University, Shanghai, China Tian Hong Department of Biochemistry and Cellular and Molecular Biology, The University of Tennessee, Knoxville, Tennessee, United States of America

Dynamical Systems Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2004.11001

Distinguished Paper Award in 2020

PLOS Computational Biology, 15, (3), e1006855, 2019.3
[ Download ] [ 2020-04-25 02:24:20 uploaded by chan65 ] [ 392 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[21] Fast and accurate genome comparison using genome images: The Extended Natural Vector Method

Shaojun Pei Tsinghua University Wenhui Dong Tsinghua University Xiuqiong Chen Tsinghua Univerisity Rong Lucy He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2004.42002

Molecular Phylogenetics and Evolution, 141, 106633
[ Download ] [ 2020-04-23 21:45:09 uploaded by psj17 ] [ 390 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[22] A novel alignment-free method for HIV-1 subtype classification

Lily He Tsinghua University Rui Dong Tsinghua University Rong Lucy He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2004.42001

Infection, Genetics and Evolution, 77, 104080, 2020.1
[ Download ] [ 2020-04-23 10:51:36 uploaded by RuiDong ] [ 330 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[23] G-sup: a clustering algorithm for cryo-electron microscopy images of asymmetric particles

Ting-Li Chen Institute of Statistical Science, Academia Sinica Dai-Ni Hsieh Institute of Statistical Science, Academia Sinica Hung Hung Institute of Epidemiology and Preventive Medicine I-Ping Tu Institute of Statistical Science, Academia Sinica Pei-Shien Wu Dept. of Biostatistics, Duke University Yi-Ming Wu Institute of Chemistry, Academia Sinica Wei-Hau Chang Institute of Chemistry, Academia Sinica Su-Yun Huang Institute of Statistical Science, Academia Sinica

Statistics Theory and Methods Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:2004.33002

The Annals of Applied Statistics , 8, (1), 259-285, 2014
[ Download ] [ 2020-04-22 14:03:32 uploaded by ipingtu ] [ 264 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[24] A novel approach to clustering genome sequences using inter-nucleotide covariance

Rui Dong Tsinghua University Lily He Tsinghua University Rong Lucy He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1909.42002

Frontiers in Genetics, 10, (234), 234, 2019.4
[ Download ] [ 2019-09-15 13:55:12 uploaded by Stephenyau ] [ 446 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[25] Large-Scale Genome Comparison Based on Cumulative Fourier Power and Phase Spectra: Central Moment and Covariance Vector

Shaojun Pei Department of Mathematical Sciences, Tsinghua University, Beijing, PR China Rui Dong Department of Mathematical Sciences, Tsinghua University, Beijing, PR China Rong Lucy He Department of Biological Sciences, Chicago State University, Chicago, IL 60628, USA Stephen S.-T. Yau Department of Mathematical Sciences, Tsinghua University, Beijing, PR China

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1909.42001

Computational and Structural Biotechnology Journal, 17, 982-994, 2019.7
[ Download ] [ 2019-09-04 17:31:31 uploaded by Stephenyau ] [ 463 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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