Data Analysis, Bio-Statistics, Bio-Mathematics

[26] Whole genome single nucleotide polymorphism genotyping of Staphylococcus aureus

Changchuan Yin University of Illinois at Chicago Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1908.42001

2019.1
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[27] An age-structured continuum model for myxobacteria

Pierre Degond Imperial College London Angelika Manhart New York University Hui Yu Tsinghua University

Fluid Dynamics and Shock Waves Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1906.14001

Mathematical Models and Methods in Applied Sciences, 28, (9), 1737–1770, 2018
[ Download ] [ 2019-06-26 11:22:58 uploaded by HuiYu ] [ 750 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[28] TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions

Zixuan Cang Michigan State University Guo-Wei Wei Michigan State University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42007

Best Paper Award in 2019

PLOS Computational Biology, 13, (7), e1005690, 2017.7
[ Download ] [ 2019-04-30 00:41:13 uploaded by cangzx ] [ 490 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[29] Randomly distributed embedding making short-term high-dimensional data predictable

Huanfei Man Soochow University Siyang Leng Fudan University Kazuyuki Aihara Tokyo University Wei Lin Fudan University Luonan Chen Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42006

Best Paper Award in 2019

Proceedings of the National Academy of Sciences of the United States of America, 115, (43), E9994-E10002, 2018.10
[ Download ] [ 2019-04-28 19:34:56 uploaded by wlinfudan ] [ 931 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[30] Convex hull analysis of evolutionary and phylogenetic relationships between biological groups

Kun Tian Tsinghua University Xin Zhao Tsinghua University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42005

[ Download ] [ 2019-04-27 22:39:44 uploaded by zhaox15 ] [ 1023 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[31] Establishing the phylogeny of Prochlorococcus with a new alignment-free method

Xin Zhao Tsinghua University Kun Tian Tsinghua University Rong L. He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42004

[ Download ] [ 2019-04-27 21:48:02 uploaded by zhaox15 ] [ 589 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[32] Comparing protein structures and inferring functions with a novel three dimensional Yau Hausdorff method

Kun Tian Tsinghua University Xin Zhao Tsinghua University Yuning Zhang Tsinghua University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42003

[ Download ] [ 2019-04-27 21:26:35 uploaded by zhaox15 ] [ 720 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[33] A new efficient method for analyzing fungi species using correlations between nucleotides

Xin Zhao Tsinghua Universityf Kun Tian Tsinghua University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42002

[ Download ] [ 2019-04-27 21:10:40 uploaded by zhaox15 ] [ 718 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[34] Convex hull principle for classification and phylogeny of eukaryotic proteins

Xin Zhao Tsinghua University Kun Tian Tsinghua University Rong L. He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1904.42001

[ Download ] [ 2019-04-27 21:07:09 uploaded by zhaox15 ] [ 649 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[35] A new method to cluster genomes based on cumulative Fourier power spectrum

Rui Dong Tsinghua University Ziyue Zhu Tsinghua University Changchuan Yin University of Illinois at Chicago Rong L. He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1903.42005

Gene, 673, 2018.6
[ Download ] [ 2019-03-18 10:32:15 uploaded by RuiDong ] [ 1030 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[36] Virus Database and Online Inquiry System Based on Natural Vectors

Rui Dong Tsinghua University Hui Zheng The University of Illinois at Chicago Kun Tian Tsinghua University Shek-Chung Yau The Hong Kong University of Science and Technology Weiguang Mao Tsinghua University Wenping Yu Nankai University Changchuan Yin The University of Illinois at Chicago Chenglong Yu South Australian Health and Medical Research Institute Rong Lucy He Chicago State University Jie Yang The University of Illinois at Chicago Stephen S.-T Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1903.42004

Evolutionary Bioinformatics, 13, 1-7, 2017.10
[ Download ] [ 2019-03-18 10:27:40 uploaded by RuiDong ] [ 1115 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[37] Zika and Flaviviruses Phylogeny Based on the Alignment-Free Natural Vector Method

Yongkun Li Department of Mathematical Sciences, Tsinghua University Lily He Department of Mathematical Sciences, Tsinghua University Rong Lucy He Department of Biological Sciences, Chicago State University Stephen S.-T. Yau(Corresponding Department of Mathematical Sciences, Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1903.42003

Dna & Cell Biology, 36, (2), 1-8, 2017
[ Download ] [ 2019-03-15 15:03:30 uploaded by hell16 ] [ 949 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[38] A novel fast vector method for genetic sequence comparison

Yongkun Li 1Department of Mathematical Sciences, Tsinghua University Lily He 1Department of Mathematical Sciences, Tsinghua University Rong Lucy He 2Department of Biological Sciences, Chicago State University Stephen S.-T. Yau(Corresponding author) 1Department of Mathematical Sciences, Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1903.42002

Scientific Reports, 1, (12226), 2017.9
[ Download ] [ 2019-03-15 14:57:39 uploaded by hell16 ] [ 738 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[39] A novel alignment-free vector method to cluster protein sequences

Lily He Department of Mathematical Sciences, Tsinghua University Yongkun Li Department of Mathematical Sciences, Tsinghua University Rong Lucy He Department of Biological Sciences, Chicago State University Stephen S.-T. Yau(Corresponding author) Department of Mathematical Sciences, Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1903.42001

Journal of Theoretical Biology, 427, 41-52, 2017.6
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[40] Nearly Optimal Stochastic Approximation for Online Principal Subspace Estimation

Xin Liang National Chiao Tung University Zhen-Chen Guo National Chiao Tung University Ren-Cang Li University of Texas at Arlington Wen-Wei Lin National Chiao Tung University

Optimization and Control Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1711.27001

2018.8
[ Download ] [ 2017-11-18 01:14:40 uploaded by jinsanliang ] [ 495 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[41] Graph connection laplacian methods can be made robust to noise

Noureddine El Karoui UC Berkeley Hau-tieng Wu University of Toronto

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1704.42002

Distinguished Paper Award in 2018

2016
[ Download ] [ 2017-04-29 11:10:13 uploaded by hauwu ] [ 1424 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[42] Wave-Shape Function Analysis: When Cepstrum Meets Time–Frequency Analysis

Chen-Yun Lin University of Toronto Li Su Academia Sinica Hau-Tieng Wu University of Toronto

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1704.42001

Distinguished Paper Award in 2018

Journal of Fourier Analysis and Applications , 2017.2
[ Download ] [ 2017-04-24 23:39:53 uploaded by cylin ] [ 1625 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[43] A novel strategy for clustering major depression individuals using whole-genome sequencing variant data

Chenglong Yu South Australian Health and Medical Research Institute Bernhard T. Baune University of Adelaide Julio Licinio South Australian Health and Medical Research Institute Ma-Li Wong South Australian Health and Medical Research Institute

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1703.42005

Scientific Reports, 7, (44389), 2017
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[44] Mathematical modeling of vertebrate limb development

Yong-Tao Zhang University of Notre Dame Mark S. Alber University of Notre Dame Stuart A. Newman New York Medical College

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1703.42004

Mathematical Biosciences, 243, 1-17, 2013
[ Download ] [ 2017-03-13 22:08:27 uploaded by ytzhangND ] [ 2138 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[45] DFA7, a New Method to Distinguish between Intron-Containing and Intronless Genes

Chenglong Yu South Australian Health and Medical Research Institute Mo Deng Lu Zheng Rong Lucy He Jie Yang Stephen S.-T. Yau

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1703.42003

PLoS ONE, 2014
[ Download ] [ 2017-03-13 20:56:51 uploaded by yclong8848 ] [ 827 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[46] Real Time Classification of Viruses in 12 Dimensions

Chenglong Yu South Australian Health and Medical Research Institute Troy Hernandez Hui Zheng Shek-Chung Yau Hsin-Hsiung Huang Rong Lucy He Jie Yang Stephen S.-T. Yau

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1703.42002

PLoS ONE, 2013
[ Download ] [ 2017-03-13 20:54:32 uploaded by yclong8848 ] [ 826 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[47] Protein space: A natural method for realizing the nature of protein universe

Chenglong Yu South Australian Health and Medical Research Institute Mo Deng Shiu-Yuen Cheng Shek-Chung Yau Rong L. He Stephen S.-T. Yau

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1703.42001

Journal of Theoretical Biology, 318, 197-204, 2013
[ Download ] [ 2017-03-13 20:50:42 uploaded by yclong8848 ] [ 782 downloads ] [ 0 comments ] [ Abstract ] [ Full ]
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[48] A new method for studying the evolutionary origin of the SAR11 clade marine bacteria

Xin Zhao Tsinghua University Xiaogeng Wan Tsinghua University Rong L.He Chicago State University Stephen S.-T. Yau Tsinghua University

Data Analysis, Bio-Statistics, Bio-Mathematics mathscidoc:1611.13004

Molecular Phylogenetics and Evolution, 98, 271-279, 2016.5
[ Download ] [ 2016-11-25 19:58:36 uploaded by zhaox15 ] [ 938 downloads ] [ 0 comments ] [ Cited by 1 ] [ Abstract ] [ Full ]
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